Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2888 and Dsui_2889 are separated by 42 nucleotides Dsui_2889 and Dsui_2890 are separated by 53 nucleotides Dsui_2890 and Dsui_2891 are separated by 21 nucleotides Dsui_2891 and Dsui_2892 are separated by 86 nucleotides
Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278
_2888
Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121
_2889
Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103
_2890
Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532
_2891
Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596
_2892
Position (kb)
3086
3087
3088
3089 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3085.269 kb on - strand at 3085.305 kb on + strand at 3085.373 kb on - strand at 3085.478 kb on + strand, within Dsui_2889 at 3085.630 kb on + strand, within Dsui_2889 at 3085.718 kb on - strand, within Dsui_2889 at 3085.745 kb on - strand at 3085.826 kb on + strand, within Dsui_2889 at 3085.870 kb on + strand, within Dsui_2889 at 3086.024 kb on + strand, within Dsui_2889 at 3086.024 kb on + strand, within Dsui_2889 at 3086.034 kb on + strand, within Dsui_2889 at 3086.357 kb on + strand at 3086.365 kb on - strand at 3086.404 kb on + strand at 3086.468 kb on - strand, within Dsui_2890 at 3086.640 kb on + strand, within Dsui_2890 at 3086.648 kb on - strand, within Dsui_2890 at 3086.659 kb on + strand, within Dsui_2890 at 3086.748 kb on - strand, within Dsui_2890 at 3086.770 kb on - strand, within Dsui_2890 at 3086.808 kb on - strand at 3086.823 kb on + strand, within Dsui_2890 at 3086.826 kb on - strand, within Dsui_2890 at 3086.857 kb on + strand, within Dsui_2890 at 3086.890 kb on + strand, within Dsui_2890 at 3087.017 kb on - strand, within Dsui_2890 at 3087.166 kb on - strand, within Dsui_2890 at 3087.225 kb on - strand, within Dsui_2890 at 3087.490 kb on + strand, within Dsui_2890 at 3087.498 kb on - strand, within Dsui_2890 at 3087.714 kb on - strand, within Dsui_2890 at 3087.778 kb on + strand, within Dsui_2890 at 3087.873 kb on + strand, within Dsui_2890 at 3087.942 kb on + strand at 3087.983 kb on - strand at 3088.067 kb on + strand at 3088.080 kb on - strand at 3088.143 kb on - strand at 3088.144 kb on - strand at 3088.229 kb on + strand, within Dsui_2891 at 3088.420 kb on + strand, within Dsui_2891 at 3088.444 kb on + strand, within Dsui_2891 at 3088.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 3,085,269 - +0.5 3,085,305 + -0.0 3,085,373 - -0.5 3,085,478 + Dsui_2889 0.20 -0.0 3,085,630 + Dsui_2889 0.39 +0.2 3,085,718 - Dsui_2889 0.50 +0.5 3,085,745 - -0.5 3,085,826 + Dsui_2889 0.63 -0.2 3,085,870 + Dsui_2889 0.69 +0.1 3,086,024 + Dsui_2889 0.88 -0.2 3,086,024 + Dsui_2889 0.88 -0.5 3,086,034 + Dsui_2889 0.89 -0.3 3,086,357 + +0.5 3,086,365 - -0.5 3,086,404 + +0.5 3,086,468 - Dsui_2890 0.15 -1.1 3,086,640 + Dsui_2890 0.24 -1.8 3,086,648 - Dsui_2890 0.25 +0.5 3,086,659 + Dsui_2890 0.25 -1.8 3,086,748 - Dsui_2890 0.30 +0.5 3,086,770 - Dsui_2890 0.31 -1.5 3,086,808 - +0.5 3,086,823 + Dsui_2890 0.34 -1.5 3,086,826 - Dsui_2890 0.34 -1.1 3,086,857 + Dsui_2890 0.35 -0.5 3,086,890 + Dsui_2890 0.37 +0.5 3,087,017 - Dsui_2890 0.44 -1.8 3,087,166 - Dsui_2890 0.51 -0.5 3,087,225 - Dsui_2890 0.54 -0.5 3,087,490 + Dsui_2890 0.68 -1.8 3,087,498 - Dsui_2890 0.69 +0.5 3,087,714 - Dsui_2890 0.80 -0.5 3,087,778 + Dsui_2890 0.83 -0.5 3,087,873 + Dsui_2890 0.88 -0.5 3,087,942 + -2.8 3,087,983 - +1.0 3,088,067 + -1.1 3,088,080 - -0.7 3,088,143 - -0.1 3,088,144 - -0.0 3,088,229 + Dsui_2891 0.25 +0.5 3,088,420 + Dsui_2891 0.72 +0.5 3,088,444 + Dsui_2891 0.78 +0.5 3,088,449 + +0.5
Or see this region's nucleotide sequence