Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2886 and Dsui_2887 overlap by 1 nucleotides Dsui_2887 and Dsui_2888 overlap by 4 nucleotides Dsui_2888 and Dsui_2889 are separated by 42 nucleotides Dsui_2889 and Dsui_2890 are separated by 53 nucleotides
Dsui_2886: Dsui_2886 - intracellular septation protein A, at 3,084,168 to 3,084,707
_2886
Dsui_2887: Dsui_2887 - hypothetical protein, at 3,084,707 to 3,085,009
_2887
Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278
_2888
Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121
_2889
Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103
_2890
Position (kb)
3085
3086 Strain fitness (log2 ratio)
-2
-1
0
1 at 3084.040 kb on - strand at 3084.664 kb on + strand at 3084.820 kb on - strand at 3084.829 kb on + strand, within Dsui_2887 at 3084.906 kb on + strand, within Dsui_2887 at 3084.907 kb on + strand, within Dsui_2887 at 3084.970 kb on + strand, within Dsui_2887 at 3085.133 kb on + strand, within Dsui_2888 at 3085.141 kb on - strand, within Dsui_2888 at 3085.161 kb on - strand, within Dsui_2888 at 3085.269 kb on - strand at 3085.305 kb on + strand at 3085.373 kb on - strand at 3085.478 kb on + strand, within Dsui_2889 at 3085.630 kb on + strand, within Dsui_2889 at 3085.718 kb on - strand, within Dsui_2889 at 3085.745 kb on - strand at 3085.826 kb on + strand, within Dsui_2889 at 3085.870 kb on + strand, within Dsui_2889 at 3086.024 kb on + strand, within Dsui_2889 at 3086.024 kb on + strand, within Dsui_2889 at 3086.034 kb on + strand, within Dsui_2889
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 3,084,040 - +0.0 3,084,664 + -0.6 3,084,820 - +0.5 3,084,829 + Dsui_2887 0.40 -0.1 3,084,906 + Dsui_2887 0.66 +0.1 3,084,907 + Dsui_2887 0.66 +1.0 3,084,970 + Dsui_2887 0.87 -0.1 3,085,133 + Dsui_2888 0.47 +0.1 3,085,141 - Dsui_2888 0.49 -0.5 3,085,161 - Dsui_2888 0.57 -1.8 3,085,269 - +0.5 3,085,305 + -0.0 3,085,373 - -0.5 3,085,478 + Dsui_2889 0.20 -0.0 3,085,630 + Dsui_2889 0.39 +0.2 3,085,718 - Dsui_2889 0.50 +0.5 3,085,745 - -0.5 3,085,826 + Dsui_2889 0.63 -0.2 3,085,870 + Dsui_2889 0.69 +0.1 3,086,024 + Dsui_2889 0.88 -0.2 3,086,024 + Dsui_2889 0.88 -0.5 3,086,034 + Dsui_2889 0.89 -0.3
Or see this region's nucleotide sequence