Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2779 and Dsui_2780 are separated by 13 nucleotides Dsui_2780 and Dsui_2781 are separated by 14 nucleotides Dsui_2781 and Dsui_2782 overlap by 4 nucleotides
Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797
_2779
Dsui_2780: Dsui_2780 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,944,811 to 2,945,245
_2780
Dsui_2781: Dsui_2781 - PAS domain S-box, at 2,945,260 to 2,949,126
_2781
Dsui_2782: Dsui_2782 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 2,949,123 to 2,950,247
_2782
Position (kb)
2945
2946
2947
2948
2949
2950 Strain fitness (log2 ratio)
-2
-1
0
1 at 2944.509 kb on - strand at 2944.515 kb on + strand at 2944.756 kb on - strand at 2944.783 kb on + strand at 2944.791 kb on - strand at 2944.801 kb on - strand at 2945.170 kb on - strand at 2945.170 kb on - strand, within Dsui_2780 at 2945.212 kb on - strand at 2945.462 kb on + strand at 2945.924 kb on - strand at 2945.968 kb on + strand at 2946.109 kb on + strand at 2946.319 kb on + strand at 2946.686 kb on + strand, within Dsui_2781 at 2946.686 kb on + strand, within Dsui_2781 at 2946.688 kb on - strand, within Dsui_2781 at 2947.016 kb on - strand at 2947.410 kb on - strand, within Dsui_2781 at 2947.509 kb on - strand, within Dsui_2781 at 2947.681 kb on - strand, within Dsui_2781 at 2947.681 kb on - strand, within Dsui_2781 at 2947.700 kb on + strand, within Dsui_2781 at 2947.700 kb on + strand, within Dsui_2781 at 2947.702 kb on - strand, within Dsui_2781 at 2948.789 kb on + strand at 2948.903 kb on + strand at 2949.114 kb on - strand at 2949.342 kb on - strand at 2949.696 kb on + strand, within Dsui_2782 at 2949.721 kb on + strand, within Dsui_2782 at 2949.778 kb on - strand, within Dsui_2782
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,944,509 - +0.5 2,944,515 + +0.5 2,944,756 - -1.0 2,944,783 + +0.5 2,944,791 - -0.5 2,944,801 - -0.5 2,945,170 - +0.5 2,945,170 - Dsui_2780 0.83 -1.5 2,945,212 - -0.5 2,945,462 + +0.5 2,945,924 - +0.5 2,945,968 + -0.5 2,946,109 + +0.5 2,946,319 + +0.5 2,946,686 + Dsui_2781 0.37 +0.5 2,946,686 + Dsui_2781 0.37 +0.5 2,946,688 - Dsui_2781 0.37 -0.0 2,947,016 - +0.5 2,947,410 - Dsui_2781 0.56 -0.5 2,947,509 - Dsui_2781 0.58 -0.5 2,947,681 - Dsui_2781 0.63 -0.5 2,947,681 - Dsui_2781 0.63 -1.8 2,947,700 + Dsui_2781 0.63 -0.5 2,947,700 + Dsui_2781 0.63 -1.0 2,947,702 - Dsui_2781 0.63 -1.8 2,948,789 + -1.5 2,948,903 + -2.0 2,949,114 - -0.4 2,949,342 - +0.6 2,949,696 + Dsui_2782 0.51 -0.4 2,949,721 + Dsui_2782 0.53 +0.6 2,949,778 - Dsui_2782 0.58 +0.6
Or see this region's nucleotide sequence