Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2605 and Dsui_2606 are separated by 28 nucleotides Dsui_2606 and Dsui_2607 overlap by 4 nucleotides Dsui_2607 and Dsui_2608 are separated by 22 nucleotides
Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408
_2605
Dsui_2606: Dsui_2606 - soluble lytic murein transglycosylase-like protein, at 2,761,437 to 2,761,913
_2606
Dsui_2607: Dsui_2607 - hypothetical protein, at 2,761,910 to 2,762,131
_2607
Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610
_2608
Position (kb)
2761
2762
2763 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2761.005 kb on - strand, within Dsui_2605 at 2761.063 kb on + strand, within Dsui_2605 at 2761.094 kb on + strand, within Dsui_2605 at 2761.170 kb on - strand, within Dsui_2605 at 2761.249 kb on - strand at 2761.259 kb on - strand at 2761.513 kb on + strand, within Dsui_2606 at 2761.595 kb on - strand, within Dsui_2606 at 2761.634 kb on + strand, within Dsui_2606 at 2761.642 kb on - strand, within Dsui_2606 at 2761.891 kb on + strand at 2761.891 kb on + strand at 2762.067 kb on + strand, within Dsui_2607 at 2762.082 kb on + strand, within Dsui_2607 at 2762.140 kb on + strand at 2762.149 kb on - strand at 2762.163 kb on + strand at 2762.232 kb on + strand at 2762.298 kb on - strand at 2762.298 kb on - strand at 2762.379 kb on + strand at 2762.464 kb on + strand, within Dsui_2608 at 2762.561 kb on - strand, within Dsui_2608 at 2762.598 kb on + strand, within Dsui_2608 at 2762.606 kb on - strand, within Dsui_2608 at 2762.740 kb on + strand, within Dsui_2608 at 2762.740 kb on + strand, within Dsui_2608 at 2762.754 kb on - strand, within Dsui_2608 at 2762.766 kb on - strand, within Dsui_2608 at 2762.883 kb on + strand, within Dsui_2608 at 2762.985 kb on + strand, within Dsui_2608 at 2762.989 kb on - strand, within Dsui_2608
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,761,005 - Dsui_2605 0.77 +0.5 2,761,063 + Dsui_2605 0.80 +0.5 2,761,094 + Dsui_2605 0.82 +0.5 2,761,170 - Dsui_2605 0.86 -1.1 2,761,249 - -1.1 2,761,259 - -0.5 2,761,513 + Dsui_2606 0.16 -1.1 2,761,595 - Dsui_2606 0.33 +0.5 2,761,634 + Dsui_2606 0.41 +0.5 2,761,642 - Dsui_2606 0.43 +0.5 2,761,891 + -0.5 2,761,891 + +0.5 2,762,067 + Dsui_2607 0.71 -1.1 2,762,082 + Dsui_2607 0.77 -1.1 2,762,140 + -1.1 2,762,149 - +0.5 2,762,163 + -0.5 2,762,232 + -3.1 2,762,298 - -1.5 2,762,298 - +0.5 2,762,379 + -1.1 2,762,464 + Dsui_2608 0.13 +0.5 2,762,561 - Dsui_2608 0.17 +0.5 2,762,598 + Dsui_2608 0.18 +0.5 2,762,606 - Dsui_2608 0.18 +0.5 2,762,740 + Dsui_2608 0.24 +0.5 2,762,740 + Dsui_2608 0.24 +0.5 2,762,754 - Dsui_2608 0.24 -1.1 2,762,766 - Dsui_2608 0.25 +0.5 2,762,883 + Dsui_2608 0.30 -0.5 2,762,985 + Dsui_2608 0.34 -0.5 2,762,989 - Dsui_2608 0.34 -1.1
Or see this region's nucleotide sequence