Strain Fitness in Dechlorosoma suillum PS around Dsui_2169

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2168 and Dsui_2169 are separated by 71 nucleotidesDsui_2169 and Dsui_2170 overlap by 4 nucleotides Dsui_2168: Dsui_2168 - putative hydrolase of alpha/beta superfamily, at 2,305,254 to 2,306,219 _2168 Dsui_2169: Dsui_2169 - hypothetical protein, at 2,306,291 to 2,306,572 _2169 Dsui_2170: Dsui_2170 - putative iron-regulated membrane protein, at 2,306,569 to 2,308,077 _2170 Position (kb) 2306 2307Strain fitness (log2 ratio) -1 0 1at 2305.388 kb on + strandat 2305.596 kb on - strandat 2305.687 kb on - strandat 2306.214 kb on + strandat 2306.305 kb on + strandat 2306.407 kb on - strandat 2306.500 kb on + strandat 2306.838 kb on - strandat 2306.883 kb on - strandat 2306.938 kb on + strand, within Dsui_2170at 2306.963 kb on + strandat 2307.021 kb on + strandat 2307.091 kb on - strandat 2307.109 kb on - strand, within Dsui_2170at 2307.109 kb on - strandat 2307.470 kb on + strandat 2307.470 kb on + strandat 2307.470 kb on + strandat 2307.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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2,305,388 + -0.2
2,305,596 - -0.2
2,305,687 - +0.8
2,306,214 + +0.8
2,306,305 + -1.6
2,306,407 - +0.8
2,306,500 + +0.8
2,306,838 - +0.8
2,306,883 - -1.2
2,306,938 + Dsui_2170 0.24 -1.2
2,306,963 + +0.8
2,307,021 + +0.8
2,307,091 - +0.8
2,307,109 - Dsui_2170 0.36 -0.1
2,307,109 - +0.8
2,307,470 + +0.8
2,307,470 + -0.2
2,307,470 + +0.8
2,307,532 + -0.8

Or see this region's nucleotide sequence