Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2076 and Dsui_2077 are separated by 96 nucleotides Dsui_2077 and Dsui_2078 are separated by 153 nucleotides Dsui_2078 and Dsui_2079 are separated by 135 nucleotides
Dsui_2076: Dsui_2076 - cytochrome c, mono- and diheme variants family, at 2,195,004 to 2,196,734
_2076
Dsui_2077: Dsui_2077 - cAMP-binding protein, at 2,196,831 to 2,198,312
_2077
Dsui_2078: Dsui_2078 - cytochrome c551/c552, at 2,198,466 to 2,198,774
_2078
Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745
_2079
Position (kb)
2196
2197
2198
2199 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2195.872 kb on + strand, within Dsui_2076 at 2195.872 kb on + strand, within Dsui_2076 at 2195.880 kb on - strand at 2195.880 kb on - strand, within Dsui_2076 at 2195.882 kb on + strand at 2195.903 kb on + strand, within Dsui_2076 at 2196.011 kb on + strand, within Dsui_2076 at 2196.016 kb on + strand, within Dsui_2076 at 2196.019 kb on - strand at 2196.019 kb on - strand, within Dsui_2076 at 2196.215 kb on - strand at 2196.354 kb on - strand, within Dsui_2076 at 2196.410 kb on + strand at 2196.477 kb on - strand at 2196.479 kb on + strand, within Dsui_2076 at 2196.520 kb on + strand at 2196.591 kb on + strand at 2196.738 kb on + strand at 2196.738 kb on + strand at 2196.976 kb on - strand at 2196.976 kb on - strand at 2197.023 kb on + strand, within Dsui_2077 at 2197.071 kb on - strand, within Dsui_2077 at 2197.071 kb on - strand, within Dsui_2077 at 2197.143 kb on + strand, within Dsui_2077 at 2197.160 kb on + strand at 2197.344 kb on + strand at 2197.344 kb on + strand, within Dsui_2077 at 2197.428 kb on - strand at 2197.459 kb on + strand, within Dsui_2077 at 2197.777 kb on + strand, within Dsui_2077 at 2197.814 kb on + strand, within Dsui_2077 at 2197.839 kb on + strand, within Dsui_2077 at 2197.977 kb on + strand, within Dsui_2077 at 2197.996 kb on + strand, within Dsui_2077 at 2198.054 kb on - strand at 2198.069 kb on - strand at 2198.095 kb on + strand, within Dsui_2077 at 2198.236 kb on - strand at 2198.265 kb on + strand at 2198.316 kb on - strand at 2198.320 kb on + strand at 2198.423 kb on + strand at 2198.426 kb on - strand at 2198.490 kb on - strand at 2198.538 kb on + strand, within Dsui_2078 at 2198.543 kb on + strand, within Dsui_2078 at 2198.543 kb on + strand at 2198.551 kb on - strand, within Dsui_2078 at 2198.567 kb on - strand, within Dsui_2078 at 2198.603 kb on + strand at 2198.624 kb on + strand at 2198.624 kb on + strand, within Dsui_2078 at 2198.624 kb on + strand, within Dsui_2078 at 2198.776 kb on + strand at 2198.986 kb on + strand at 2199.037 kb on + strand at 2199.091 kb on - strand at 2199.172 kb on - strand at 2199.179 kb on + strand at 2199.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,195,872 + Dsui_2076 0.50 -0.2 2,195,872 + Dsui_2076 0.50 -1.2 2,195,880 - +0.8 2,195,880 - Dsui_2076 0.51 -0.8 2,195,882 + -0.2 2,195,903 + Dsui_2076 0.52 +0.8 2,196,011 + Dsui_2076 0.58 -0.2 2,196,016 + Dsui_2076 0.58 -1.2 2,196,019 - -0.2 2,196,019 - Dsui_2076 0.59 -1.6 2,196,215 - -0.2 2,196,354 - Dsui_2076 0.78 -1.6 2,196,410 + +0.8 2,196,477 - -0.2 2,196,479 + Dsui_2076 0.85 -1.8 2,196,520 + -0.2 2,196,591 + -1.2 2,196,738 + -2.2 2,196,738 + +1.4 2,196,976 - +0.8 2,196,976 - -0.8 2,197,023 + Dsui_2077 0.13 -0.2 2,197,071 - Dsui_2077 0.16 -0.2 2,197,071 - Dsui_2077 0.16 +0.8 2,197,143 + Dsui_2077 0.21 -0.8 2,197,160 + +0.8 2,197,344 + +0.8 2,197,344 + Dsui_2077 0.35 -0.2 2,197,428 - +0.8 2,197,459 + Dsui_2077 0.42 +0.8 2,197,777 + Dsui_2077 0.64 -1.6 2,197,814 + Dsui_2077 0.66 -0.8 2,197,839 + Dsui_2077 0.68 +0.8 2,197,977 + Dsui_2077 0.77 +0.8 2,197,996 + Dsui_2077 0.79 -0.2 2,198,054 - +0.8 2,198,069 - +0.8 2,198,095 + Dsui_2077 0.85 -0.8 2,198,236 - -0.2 2,198,265 + -0.8 2,198,316 - -0.2 2,198,320 + +0.8 2,198,423 + -1.2 2,198,426 - -0.2 2,198,490 - -1.2 2,198,538 + Dsui_2078 0.23 -1.8 2,198,543 + Dsui_2078 0.25 -1.2 2,198,543 + -0.2 2,198,551 - Dsui_2078 0.28 -2.4 2,198,567 - Dsui_2078 0.33 -0.8 2,198,603 + -0.2 2,198,624 + +0.8 2,198,624 + Dsui_2078 0.51 +0.8 2,198,624 + Dsui_2078 0.51 -0.2 2,198,776 + -0.2 2,198,986 + -0.8 2,199,037 + +0.8 2,199,091 - -0.2 2,199,172 - +2.4 2,199,179 + +0.8 2,199,216 - +0.8
Or see this region's nucleotide sequence