Strain Fitness in Dechlorosoma suillum PS around Dsui_2070

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2069 and Dsui_2070 are separated by 130 nucleotidesDsui_2070 and Dsui_2071 are separated by 164 nucleotidesDsui_2071 and Dsui_2072 are separated by 134 nucleotides Dsui_2069: Dsui_2069 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,187,221 to 2,188,810 _2069 Dsui_2070: Dsui_2070 - transcriptional regulator, at 2,188,941 to 2,189,882 _2070 Dsui_2071: Dsui_2071 - acyl carrier protein phosphodiesterase, at 2,190,047 to 2,190,646 _2071 Dsui_2072: Dsui_2072 - Pirin-related protein, at 2,190,781 to 2,191,698 _2072 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -2 -1 0 1 2at 2187.957 kb on - strand, within Dsui_2069at 2187.957 kb on - strand, within Dsui_2069at 2187.993 kb on - strand, within Dsui_2069at 2188.054 kb on - strand, within Dsui_2069at 2188.123 kb on + strandat 2188.144 kb on - strand, within Dsui_2069at 2188.239 kb on + strandat 2188.342 kb on + strandat 2188.364 kb on + strandat 2188.400 kb on + strand, within Dsui_2069at 2188.419 kb on - strand, within Dsui_2069at 2188.455 kb on - strand, within Dsui_2069at 2188.467 kb on + strandat 2188.476 kb on - strand, within Dsui_2069at 2188.633 kb on + strandat 2188.675 kb on + strandat 2188.686 kb on - strandat 2188.686 kb on - strandat 2188.705 kb on - strandat 2188.787 kb on + strandat 2188.800 kb on - strandat 2188.800 kb on - strandat 2188.892 kb on + strandat 2188.987 kb on - strandat 2189.039 kb on + strandat 2189.039 kb on + strandat 2189.047 kb on - strand, within Dsui_2070at 2189.075 kb on + strandat 2189.083 kb on - strand, within Dsui_2070at 2189.129 kb on - strand, within Dsui_2070at 2189.141 kb on - strand, within Dsui_2070at 2189.259 kb on + strand, within Dsui_2070at 2189.267 kb on - strand, within Dsui_2070at 2189.296 kb on - strand, within Dsui_2070at 2189.360 kb on - strand, within Dsui_2070at 2189.385 kb on + strand, within Dsui_2070at 2189.468 kb on + strand, within Dsui_2070at 2189.507 kb on + strandat 2189.740 kb on - strand, within Dsui_2070at 2189.740 kb on - strand, within Dsui_2070at 2189.793 kb on + strandat 2189.847 kb on - strandat 2189.857 kb on - strandat 2190.000 kb on + strandat 2190.015 kb on + strandat 2190.023 kb on + strandat 2190.217 kb on - strandat 2190.243 kb on + strand, within Dsui_2071at 2190.243 kb on + strandat 2190.251 kb on - strand, within Dsui_2071at 2190.288 kb on + strandat 2190.314 kb on + strand, within Dsui_2071at 2190.495 kb on + strandat 2190.620 kb on + strandat 2190.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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2,187,957 - Dsui_2069 0.46 +0.0
2,187,957 - Dsui_2069 0.46 -0.0
2,187,993 - Dsui_2069 0.49 -1.2
2,188,054 - Dsui_2069 0.52 +2.1
2,188,123 + +0.8
2,188,144 - Dsui_2069 0.58 +1.4
2,188,239 + +0.8
2,188,342 + -0.2
2,188,364 + -0.8
2,188,400 + Dsui_2069 0.74 +1.0
2,188,419 - Dsui_2069 0.75 +0.3
2,188,455 - Dsui_2069 0.78 +0.1
2,188,467 + -0.2
2,188,476 - Dsui_2069 0.79 +1.4
2,188,633 + -0.2
2,188,675 + +0.8
2,188,686 - +0.1
2,188,686 - +0.2
2,188,705 - -0.5
2,188,787 + +0.8
2,188,800 - -0.7
2,188,800 - -0.4
2,188,892 + -1.6
2,188,987 - -0.8
2,189,039 + +0.8
2,189,039 + -0.2
2,189,047 - Dsui_2070 0.11 +0.4
2,189,075 + +0.8
2,189,083 - Dsui_2070 0.15 +0.3
2,189,129 - Dsui_2070 0.20 +0.7
2,189,141 - Dsui_2070 0.21 -0.2
2,189,259 + Dsui_2070 0.34 -1.2
2,189,267 - Dsui_2070 0.35 +0.3
2,189,296 - Dsui_2070 0.38 +0.7
2,189,360 - Dsui_2070 0.44 +0.3
2,189,385 + Dsui_2070 0.47 -0.2
2,189,468 + Dsui_2070 0.56 -0.8
2,189,507 + +0.8
2,189,740 - Dsui_2070 0.85 +0.2
2,189,740 - Dsui_2070 0.85 -0.1
2,189,793 + -0.2
2,189,847 - -0.3
2,189,857 - -0.4
2,190,000 + -0.2
2,190,015 + +0.8
2,190,023 + -0.2
2,190,217 - +0.8
2,190,243 + Dsui_2071 0.33 -0.2
2,190,243 + +0.8
2,190,251 - Dsui_2071 0.34 -1.2
2,190,288 + +0.8
2,190,314 + Dsui_2071 0.45 -2.0
2,190,495 + +0.8
2,190,620 + -0.2
2,190,787 + -0.2

Or see this region's nucleotide sequence