Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2069 and Dsui_2070 are separated by 130 nucleotides Dsui_2070 and Dsui_2071 are separated by 164 nucleotides Dsui_2071 and Dsui_2072 are separated by 134 nucleotides
Dsui_2069: Dsui_2069 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,187,221 to 2,188,810
_2069
Dsui_2070: Dsui_2070 - transcriptional regulator, at 2,188,941 to 2,189,882
_2070
Dsui_2071: Dsui_2071 - acyl carrier protein phosphodiesterase, at 2,190,047 to 2,190,646
_2071
Dsui_2072: Dsui_2072 - Pirin-related protein, at 2,190,781 to 2,191,698
_2072
Position (kb)
2188
2189
2190 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2187.957 kb on - strand, within Dsui_2069 at 2187.957 kb on - strand, within Dsui_2069 at 2187.993 kb on - strand, within Dsui_2069 at 2188.054 kb on - strand, within Dsui_2069 at 2188.123 kb on + strand at 2188.144 kb on - strand, within Dsui_2069 at 2188.239 kb on + strand at 2188.342 kb on + strand at 2188.364 kb on + strand at 2188.400 kb on + strand, within Dsui_2069 at 2188.419 kb on - strand, within Dsui_2069 at 2188.455 kb on - strand, within Dsui_2069 at 2188.467 kb on + strand at 2188.476 kb on - strand, within Dsui_2069 at 2188.633 kb on + strand at 2188.675 kb on + strand at 2188.686 kb on - strand at 2188.686 kb on - strand at 2188.705 kb on - strand at 2188.787 kb on + strand at 2188.800 kb on - strand at 2188.800 kb on - strand at 2188.892 kb on + strand at 2188.987 kb on - strand at 2189.039 kb on + strand at 2189.039 kb on + strand at 2189.047 kb on - strand, within Dsui_2070 at 2189.075 kb on + strand at 2189.083 kb on - strand, within Dsui_2070 at 2189.129 kb on - strand, within Dsui_2070 at 2189.141 kb on - strand, within Dsui_2070 at 2189.259 kb on + strand, within Dsui_2070 at 2189.267 kb on - strand, within Dsui_2070 at 2189.296 kb on - strand, within Dsui_2070 at 2189.360 kb on - strand, within Dsui_2070 at 2189.385 kb on + strand, within Dsui_2070 at 2189.468 kb on + strand, within Dsui_2070 at 2189.507 kb on + strand at 2189.740 kb on - strand, within Dsui_2070 at 2189.740 kb on - strand, within Dsui_2070 at 2189.793 kb on + strand at 2189.847 kb on - strand at 2189.857 kb on - strand at 2190.000 kb on + strand at 2190.015 kb on + strand at 2190.023 kb on + strand at 2190.217 kb on - strand at 2190.243 kb on + strand, within Dsui_2071 at 2190.243 kb on + strand at 2190.251 kb on - strand, within Dsui_2071 at 2190.288 kb on + strand at 2190.314 kb on + strand, within Dsui_2071 at 2190.495 kb on + strand at 2190.620 kb on + strand at 2190.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,187,957 - Dsui_2069 0.46 +0.0 2,187,957 - Dsui_2069 0.46 -0.0 2,187,993 - Dsui_2069 0.49 -1.2 2,188,054 - Dsui_2069 0.52 +2.1 2,188,123 + +0.8 2,188,144 - Dsui_2069 0.58 +1.4 2,188,239 + +0.8 2,188,342 + -0.2 2,188,364 + -0.8 2,188,400 + Dsui_2069 0.74 +1.0 2,188,419 - Dsui_2069 0.75 +0.3 2,188,455 - Dsui_2069 0.78 +0.1 2,188,467 + -0.2 2,188,476 - Dsui_2069 0.79 +1.4 2,188,633 + -0.2 2,188,675 + +0.8 2,188,686 - +0.1 2,188,686 - +0.2 2,188,705 - -0.5 2,188,787 + +0.8 2,188,800 - -0.7 2,188,800 - -0.4 2,188,892 + -1.6 2,188,987 - -0.8 2,189,039 + +0.8 2,189,039 + -0.2 2,189,047 - Dsui_2070 0.11 +0.4 2,189,075 + +0.8 2,189,083 - Dsui_2070 0.15 +0.3 2,189,129 - Dsui_2070 0.20 +0.7 2,189,141 - Dsui_2070 0.21 -0.2 2,189,259 + Dsui_2070 0.34 -1.2 2,189,267 - Dsui_2070 0.35 +0.3 2,189,296 - Dsui_2070 0.38 +0.7 2,189,360 - Dsui_2070 0.44 +0.3 2,189,385 + Dsui_2070 0.47 -0.2 2,189,468 + Dsui_2070 0.56 -0.8 2,189,507 + +0.8 2,189,740 - Dsui_2070 0.85 +0.2 2,189,740 - Dsui_2070 0.85 -0.1 2,189,793 + -0.2 2,189,847 - -0.3 2,189,857 - -0.4 2,190,000 + -0.2 2,190,015 + +0.8 2,190,023 + -0.2 2,190,217 - +0.8 2,190,243 + Dsui_2071 0.33 -0.2 2,190,243 + +0.8 2,190,251 - Dsui_2071 0.34 -1.2 2,190,288 + +0.8 2,190,314 + Dsui_2071 0.45 -2.0 2,190,495 + +0.8 2,190,620 + -0.2 2,190,787 + -0.2
Or see this region's nucleotide sequence