Strain Fitness in Dechlorosoma suillum PS around Dsui_2033

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2032 and Dsui_2033 are separated by 84 nucleotidesDsui_2033 and Dsui_2034 are separated by 142 nucleotides Dsui_2032: Dsui_2032 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,150,567 to 2,153,197 _2032 Dsui_2033: Dsui_2033 - transcriptional regulator, at 2,153,282 to 2,154,148 _2033 Dsui_2034: Dsui_2034 - DNA gyrase inhibitor, at 2,154,291 to 2,155,157 _2034 Position (kb) 2153 2154 2155Strain fitness (log2 ratio) -2 -1 0 1at 2152.310 kb on + strandat 2152.357 kb on - strandat 2152.381 kb on + strand, within Dsui_2032at 2152.391 kb on - strand, within Dsui_2032at 2152.427 kb on - strandat 2152.716 kb on + strandat 2152.744 kb on + strandat 2152.748 kb on - strandat 2152.776 kb on + strandat 2152.895 kb on + strand, within Dsui_2032at 2152.930 kb on + strand, within Dsui_2032at 2153.019 kb on + strandat 2153.019 kb on + strandat 2153.019 kb on + strandat 2153.027 kb on - strandat 2153.182 kb on + strandat 2153.209 kb on - strandat 2153.320 kb on + strandat 2153.328 kb on - strandat 2153.385 kb on - strand, within Dsui_2033at 2153.462 kb on + strand, within Dsui_2033at 2153.611 kb on - strand, within Dsui_2033at 2153.685 kb on - strand, within Dsui_2033at 2153.845 kb on + strand, within Dsui_2033at 2153.901 kb on - strand, within Dsui_2033at 2153.903 kb on + strandat 2153.911 kb on - strandat 2153.999 kb on + strand, within Dsui_2033at 2154.051 kb on + strandat 2154.102 kb on - strandat 2154.178 kb on - strandat 2154.215 kb on - strandat 2154.261 kb on - strandat 2154.335 kb on + strandat 2154.336 kb on + strandat 2154.344 kb on - strandat 2154.344 kb on - strandat 2154.516 kb on - strandat 2154.529 kb on - strandat 2154.540 kb on + strand, within Dsui_2034at 2154.591 kb on - strand, within Dsui_2034at 2154.741 kb on + strand, within Dsui_2034at 2154.741 kb on - strandat 2154.749 kb on - strand, within Dsui_2034at 2154.751 kb on - strandat 2154.754 kb on + strand, within Dsui_2034at 2154.835 kb on + strand, within Dsui_2034at 2154.854 kb on - strand, within Dsui_2034at 2154.865 kb on + strand, within Dsui_2034at 2155.049 kb on - strandat 2155.077 kb on - strandat 2155.090 kb on + strandat 2155.098 kb on - strandat 2155.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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2,152,310 + +0.8
2,152,357 - +0.8
2,152,381 + Dsui_2032 0.69 -2.2
2,152,391 - Dsui_2032 0.69 +0.8
2,152,427 - -0.8
2,152,716 + -0.8
2,152,744 + -0.8
2,152,748 - +0.8
2,152,776 + +0.8
2,152,895 + Dsui_2032 0.88 -1.2
2,152,930 + Dsui_2032 0.90 -0.8
2,153,019 + +0.8
2,153,019 + +0.8
2,153,019 + +0.8
2,153,027 - -0.8
2,153,182 + +0.8
2,153,209 - +0.8
2,153,320 + +0.8
2,153,328 - -0.8
2,153,385 - Dsui_2033 0.12 -2.2
2,153,462 + Dsui_2033 0.21 -0.2
2,153,611 - Dsui_2033 0.38 -1.8
2,153,685 - Dsui_2033 0.46 -0.2
2,153,845 + Dsui_2033 0.65 -0.8
2,153,901 - Dsui_2033 0.71 -2.2
2,153,903 + -1.2
2,153,911 - +0.8
2,153,999 + Dsui_2033 0.83 -0.2
2,154,051 + +0.8
2,154,102 - -0.2
2,154,178 - +0.8
2,154,215 - +0.8
2,154,261 - +0.8
2,154,335 + +0.8
2,154,336 + +0.8
2,154,344 - +0.8
2,154,344 - +0.8
2,154,516 - +0.8
2,154,529 - +0.8
2,154,540 + Dsui_2034 0.29 -1.2
2,154,591 - Dsui_2034 0.35 -1.8
2,154,741 + Dsui_2034 0.52 -1.2
2,154,741 - +0.8
2,154,749 - Dsui_2034 0.53 -0.2
2,154,751 - -1.6
2,154,754 + Dsui_2034 0.53 -0.2
2,154,835 + Dsui_2034 0.63 +0.8
2,154,854 - Dsui_2034 0.65 +0.8
2,154,865 + Dsui_2034 0.66 -0.2
2,155,049 - +0.8
2,155,077 - -1.6
2,155,090 + +0.8
2,155,098 - -0.2
2,155,135 - +0.8

Or see this region's nucleotide sequence