Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2032 and Dsui_2033 are separated by 84 nucleotides Dsui_2033 and Dsui_2034 are separated by 142 nucleotides
Dsui_2032: Dsui_2032 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,150,567 to 2,153,197
_2032
Dsui_2033: Dsui_2033 - transcriptional regulator, at 2,153,282 to 2,154,148
_2033
Dsui_2034: Dsui_2034 - DNA gyrase inhibitor, at 2,154,291 to 2,155,157
_2034
Position (kb)
2153
2154
2155 Strain fitness (log2 ratio)
-2
-1
0
1 at 2152.310 kb on + strand at 2152.357 kb on - strand at 2152.381 kb on + strand, within Dsui_2032 at 2152.391 kb on - strand, within Dsui_2032 at 2152.427 kb on - strand at 2152.716 kb on + strand at 2152.744 kb on + strand at 2152.748 kb on - strand at 2152.776 kb on + strand at 2152.895 kb on + strand, within Dsui_2032 at 2152.930 kb on + strand, within Dsui_2032 at 2153.019 kb on + strand at 2153.019 kb on + strand at 2153.019 kb on + strand at 2153.027 kb on - strand at 2153.182 kb on + strand at 2153.209 kb on - strand at 2153.320 kb on + strand at 2153.328 kb on - strand at 2153.385 kb on - strand, within Dsui_2033 at 2153.462 kb on + strand, within Dsui_2033 at 2153.611 kb on - strand, within Dsui_2033 at 2153.685 kb on - strand, within Dsui_2033 at 2153.845 kb on + strand, within Dsui_2033 at 2153.901 kb on - strand, within Dsui_2033 at 2153.903 kb on + strand at 2153.911 kb on - strand at 2153.999 kb on + strand, within Dsui_2033 at 2154.051 kb on + strand at 2154.102 kb on - strand at 2154.178 kb on - strand at 2154.215 kb on - strand at 2154.261 kb on - strand at 2154.335 kb on + strand at 2154.336 kb on + strand at 2154.344 kb on - strand at 2154.344 kb on - strand at 2154.516 kb on - strand at 2154.529 kb on - strand at 2154.540 kb on + strand, within Dsui_2034 at 2154.591 kb on - strand, within Dsui_2034 at 2154.741 kb on + strand, within Dsui_2034 at 2154.741 kb on - strand at 2154.749 kb on - strand, within Dsui_2034 at 2154.751 kb on - strand at 2154.754 kb on + strand, within Dsui_2034 at 2154.835 kb on + strand, within Dsui_2034 at 2154.854 kb on - strand, within Dsui_2034 at 2154.865 kb on + strand, within Dsui_2034 at 2155.049 kb on - strand at 2155.077 kb on - strand at 2155.090 kb on + strand at 2155.098 kb on - strand at 2155.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,152,310 + +0.8 2,152,357 - +0.8 2,152,381 + Dsui_2032 0.69 -2.2 2,152,391 - Dsui_2032 0.69 +0.8 2,152,427 - -0.8 2,152,716 + -0.8 2,152,744 + -0.8 2,152,748 - +0.8 2,152,776 + +0.8 2,152,895 + Dsui_2032 0.88 -1.2 2,152,930 + Dsui_2032 0.90 -0.8 2,153,019 + +0.8 2,153,019 + +0.8 2,153,019 + +0.8 2,153,027 - -0.8 2,153,182 + +0.8 2,153,209 - +0.8 2,153,320 + +0.8 2,153,328 - -0.8 2,153,385 - Dsui_2033 0.12 -2.2 2,153,462 + Dsui_2033 0.21 -0.2 2,153,611 - Dsui_2033 0.38 -1.8 2,153,685 - Dsui_2033 0.46 -0.2 2,153,845 + Dsui_2033 0.65 -0.8 2,153,901 - Dsui_2033 0.71 -2.2 2,153,903 + -1.2 2,153,911 - +0.8 2,153,999 + Dsui_2033 0.83 -0.2 2,154,051 + +0.8 2,154,102 - -0.2 2,154,178 - +0.8 2,154,215 - +0.8 2,154,261 - +0.8 2,154,335 + +0.8 2,154,336 + +0.8 2,154,344 - +0.8 2,154,344 - +0.8 2,154,516 - +0.8 2,154,529 - +0.8 2,154,540 + Dsui_2034 0.29 -1.2 2,154,591 - Dsui_2034 0.35 -1.8 2,154,741 + Dsui_2034 0.52 -1.2 2,154,741 - +0.8 2,154,749 - Dsui_2034 0.53 -0.2 2,154,751 - -1.6 2,154,754 + Dsui_2034 0.53 -0.2 2,154,835 + Dsui_2034 0.63 +0.8 2,154,854 - Dsui_2034 0.65 +0.8 2,154,865 + Dsui_2034 0.66 -0.2 2,155,049 - +0.8 2,155,077 - -1.6 2,155,090 + +0.8 2,155,098 - -0.2 2,155,135 - +0.8
Or see this region's nucleotide sequence