Strain Fitness in Dechlorosoma suillum PS around Dsui_2032

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2030 and Dsui_2031 are separated by 423 nucleotidesDsui_2031 and Dsui_2032 are separated by 143 nucleotidesDsui_2032 and Dsui_2033 are separated by 84 nucleotides Dsui_2030: Dsui_2030 - branched-chain amino acid aminotransferase, group I, at 2,148,645 to 2,149,571 _2030 Dsui_2031: Dsui_2031 - putative thioesterase, at 2,149,995 to 2,150,423 _2031 Dsui_2032: Dsui_2032 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,150,567 to 2,153,197 _2032 Dsui_2033: Dsui_2033 - transcriptional regulator, at 2,153,282 to 2,154,148 _2033 Position (kb) 2150 2151 2152 2153 2154Strain fitness (log2 ratio) -2 -1 0 1at 2149.587 kb on - strandat 2149.656 kb on + strandat 2149.749 kb on - strandat 2149.911 kb on + strandat 2149.919 kb on - strandat 2149.941 kb on - strandat 2150.002 kb on + strandat 2150.030 kb on - strandat 2150.030 kb on - strandat 2150.044 kb on - strandat 2150.077 kb on + strandat 2150.085 kb on - strand, within Dsui_2031at 2150.093 kb on + strandat 2150.116 kb on - strand, within Dsui_2031at 2150.198 kb on - strand, within Dsui_2031at 2150.271 kb on - strand, within Dsui_2031at 2150.318 kb on + strandat 2150.385 kb on + strandat 2150.392 kb on - strandat 2150.400 kb on - strandat 2150.581 kb on + strandat 2150.587 kb on + strandat 2150.589 kb on - strandat 2150.629 kb on + strandat 2150.911 kb on + strandat 2150.924 kb on + strandat 2150.973 kb on - strandat 2150.976 kb on + strandat 2151.203 kb on + strandat 2151.231 kb on + strandat 2151.664 kb on + strand, within Dsui_2032at 2151.668 kb on - strandat 2151.946 kb on + strandat 2151.961 kb on - strand, within Dsui_2032at 2151.963 kb on + strandat 2152.136 kb on - strandat 2152.220 kb on + strandat 2152.310 kb on + strandat 2152.357 kb on - strandat 2152.381 kb on + strand, within Dsui_2032at 2152.391 kb on - strand, within Dsui_2032at 2152.427 kb on - strandat 2152.716 kb on + strandat 2152.744 kb on + strandat 2152.748 kb on - strandat 2152.776 kb on + strandat 2152.895 kb on + strand, within Dsui_2032at 2152.930 kb on + strand, within Dsui_2032at 2153.019 kb on + strandat 2153.019 kb on + strandat 2153.019 kb on + strandat 2153.027 kb on - strandat 2153.182 kb on + strandat 2153.209 kb on - strandat 2153.320 kb on + strandat 2153.328 kb on - strandat 2153.385 kb on - strand, within Dsui_2033at 2153.462 kb on + strand, within Dsui_2033at 2153.611 kb on - strand, within Dsui_2033at 2153.685 kb on - strand, within Dsui_2033at 2153.845 kb on + strand, within Dsui_2033at 2153.901 kb on - strand, within Dsui_2033at 2153.903 kb on + strandat 2153.911 kb on - strandat 2153.999 kb on + strand, within Dsui_2033at 2154.051 kb on + strandat 2154.102 kb on - strandat 2154.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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2,149,587 - +0.8
2,149,656 + -2.7
2,149,749 - -1.2
2,149,911 + +0.8
2,149,919 - -0.1
2,149,941 - -1.2
2,150,002 + +0.8
2,150,030 - -0.8
2,150,030 - +0.8
2,150,044 - +0.8
2,150,077 + -0.8
2,150,085 - Dsui_2031 0.21 +0.8
2,150,093 + -0.2
2,150,116 - Dsui_2031 0.28 -2.0
2,150,198 - Dsui_2031 0.47 +0.8
2,150,271 - Dsui_2031 0.64 +0.8
2,150,318 + -0.2
2,150,385 + -0.2
2,150,392 - -0.2
2,150,400 - +0.8
2,150,581 + -1.2
2,150,587 + -0.2
2,150,589 - -0.2
2,150,629 + +0.8
2,150,911 + +0.8
2,150,924 + +0.8
2,150,973 - +0.8
2,150,976 + +0.8
2,151,203 + -0.8
2,151,231 + +0.8
2,151,664 + Dsui_2032 0.42 -0.2
2,151,668 - -0.2
2,151,946 + +0.8
2,151,961 - Dsui_2032 0.53 -0.8
2,151,963 + +0.8
2,152,136 - -0.2
2,152,220 + +0.8
2,152,310 + +0.8
2,152,357 - +0.8
2,152,381 + Dsui_2032 0.69 -2.2
2,152,391 - Dsui_2032 0.69 +0.8
2,152,427 - -0.8
2,152,716 + -0.8
2,152,744 + -0.8
2,152,748 - +0.8
2,152,776 + +0.8
2,152,895 + Dsui_2032 0.88 -1.2
2,152,930 + Dsui_2032 0.90 -0.8
2,153,019 + +0.8
2,153,019 + +0.8
2,153,019 + +0.8
2,153,027 - -0.8
2,153,182 + +0.8
2,153,209 - +0.8
2,153,320 + +0.8
2,153,328 - -0.8
2,153,385 - Dsui_2033 0.12 -2.2
2,153,462 + Dsui_2033 0.21 -0.2
2,153,611 - Dsui_2033 0.38 -1.8
2,153,685 - Dsui_2033 0.46 -0.2
2,153,845 + Dsui_2033 0.65 -0.8
2,153,901 - Dsui_2033 0.71 -2.2
2,153,903 + -1.2
2,153,911 - +0.8
2,153,999 + Dsui_2033 0.83 -0.2
2,154,051 + +0.8
2,154,102 - -0.2
2,154,178 - +0.8

Or see this region's nucleotide sequence