Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2030 and Dsui_2031 are separated by 423 nucleotides Dsui_2031 and Dsui_2032 are separated by 143 nucleotides Dsui_2032 and Dsui_2033 are separated by 84 nucleotides
Dsui_2030: Dsui_2030 - branched-chain amino acid aminotransferase, group I, at 2,148,645 to 2,149,571
_2030
Dsui_2031: Dsui_2031 - putative thioesterase, at 2,149,995 to 2,150,423
_2031
Dsui_2032: Dsui_2032 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,150,567 to 2,153,197
_2032
Dsui_2033: Dsui_2033 - transcriptional regulator, at 2,153,282 to 2,154,148
_2033
Position (kb)
2150
2151
2152
2153
2154 Strain fitness (log2 ratio)
-2
-1
0
1 at 2149.587 kb on - strand at 2149.656 kb on + strand at 2149.749 kb on - strand at 2149.911 kb on + strand at 2149.919 kb on - strand at 2149.941 kb on - strand at 2150.002 kb on + strand at 2150.030 kb on - strand at 2150.030 kb on - strand at 2150.044 kb on - strand at 2150.077 kb on + strand at 2150.085 kb on - strand, within Dsui_2031 at 2150.093 kb on + strand at 2150.116 kb on - strand, within Dsui_2031 at 2150.198 kb on - strand, within Dsui_2031 at 2150.271 kb on - strand, within Dsui_2031 at 2150.318 kb on + strand at 2150.385 kb on + strand at 2150.392 kb on - strand at 2150.400 kb on - strand at 2150.581 kb on + strand at 2150.587 kb on + strand at 2150.589 kb on - strand at 2150.629 kb on + strand at 2150.911 kb on + strand at 2150.924 kb on + strand at 2150.973 kb on - strand at 2150.976 kb on + strand at 2151.203 kb on + strand at 2151.231 kb on + strand at 2151.664 kb on + strand, within Dsui_2032 at 2151.668 kb on - strand at 2151.946 kb on + strand at 2151.961 kb on - strand, within Dsui_2032 at 2151.963 kb on + strand at 2152.136 kb on - strand at 2152.220 kb on + strand at 2152.310 kb on + strand at 2152.357 kb on - strand at 2152.381 kb on + strand, within Dsui_2032 at 2152.391 kb on - strand, within Dsui_2032 at 2152.427 kb on - strand at 2152.716 kb on + strand at 2152.744 kb on + strand at 2152.748 kb on - strand at 2152.776 kb on + strand at 2152.895 kb on + strand, within Dsui_2032 at 2152.930 kb on + strand, within Dsui_2032 at 2153.019 kb on + strand at 2153.019 kb on + strand at 2153.019 kb on + strand at 2153.027 kb on - strand at 2153.182 kb on + strand at 2153.209 kb on - strand at 2153.320 kb on + strand at 2153.328 kb on - strand at 2153.385 kb on - strand, within Dsui_2033 at 2153.462 kb on + strand, within Dsui_2033 at 2153.611 kb on - strand, within Dsui_2033 at 2153.685 kb on - strand, within Dsui_2033 at 2153.845 kb on + strand, within Dsui_2033 at 2153.901 kb on - strand, within Dsui_2033 at 2153.903 kb on + strand at 2153.911 kb on - strand at 2153.999 kb on + strand, within Dsui_2033 at 2154.051 kb on + strand at 2154.102 kb on - strand at 2154.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,149,587 - +0.8 2,149,656 + -2.7 2,149,749 - -1.2 2,149,911 + +0.8 2,149,919 - -0.1 2,149,941 - -1.2 2,150,002 + +0.8 2,150,030 - -0.8 2,150,030 - +0.8 2,150,044 - +0.8 2,150,077 + -0.8 2,150,085 - Dsui_2031 0.21 +0.8 2,150,093 + -0.2 2,150,116 - Dsui_2031 0.28 -2.0 2,150,198 - Dsui_2031 0.47 +0.8 2,150,271 - Dsui_2031 0.64 +0.8 2,150,318 + -0.2 2,150,385 + -0.2 2,150,392 - -0.2 2,150,400 - +0.8 2,150,581 + -1.2 2,150,587 + -0.2 2,150,589 - -0.2 2,150,629 + +0.8 2,150,911 + +0.8 2,150,924 + +0.8 2,150,973 - +0.8 2,150,976 + +0.8 2,151,203 + -0.8 2,151,231 + +0.8 2,151,664 + Dsui_2032 0.42 -0.2 2,151,668 - -0.2 2,151,946 + +0.8 2,151,961 - Dsui_2032 0.53 -0.8 2,151,963 + +0.8 2,152,136 - -0.2 2,152,220 + +0.8 2,152,310 + +0.8 2,152,357 - +0.8 2,152,381 + Dsui_2032 0.69 -2.2 2,152,391 - Dsui_2032 0.69 +0.8 2,152,427 - -0.8 2,152,716 + -0.8 2,152,744 + -0.8 2,152,748 - +0.8 2,152,776 + +0.8 2,152,895 + Dsui_2032 0.88 -1.2 2,152,930 + Dsui_2032 0.90 -0.8 2,153,019 + +0.8 2,153,019 + +0.8 2,153,019 + +0.8 2,153,027 - -0.8 2,153,182 + +0.8 2,153,209 - +0.8 2,153,320 + +0.8 2,153,328 - -0.8 2,153,385 - Dsui_2033 0.12 -2.2 2,153,462 + Dsui_2033 0.21 -0.2 2,153,611 - Dsui_2033 0.38 -1.8 2,153,685 - Dsui_2033 0.46 -0.2 2,153,845 + Dsui_2033 0.65 -0.8 2,153,901 - Dsui_2033 0.71 -2.2 2,153,903 + -1.2 2,153,911 - +0.8 2,153,999 + Dsui_2033 0.83 -0.2 2,154,051 + +0.8 2,154,102 - -0.2 2,154,178 - +0.8
Or see this region's nucleotide sequence