Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1979 and Dsui_1980 are separated by 491 nucleotides Dsui_1980 and Dsui_1981 are separated by 123 nucleotides
Dsui_1979: Dsui_1979 - metal-dependent hydrolase, beta-lactamase superfamily I, at 2,088,016 to 2,088,783
_1979
Dsui_1980: Dsui_1980 - hypothetical protein, at 2,089,275 to 2,089,748
_1980
Dsui_1981: Dsui_1981 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 2,089,872 to 2,091,167
_1981
Position (kb)
2089
2090 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2088.308 kb on - strand, within Dsui_1979 at 2088.324 kb on + strand, within Dsui_1979 at 2088.324 kb on + strand, within Dsui_1979 at 2088.332 kb on - strand, within Dsui_1979 at 2088.332 kb on - strand, within Dsui_1979 at 2088.455 kb on + strand, within Dsui_1979 at 2088.482 kb on + strand, within Dsui_1979 at 2088.490 kb on - strand, within Dsui_1979 at 2088.550 kb on + strand, within Dsui_1979 at 2088.626 kb on + strand, within Dsui_1979 at 2088.685 kb on - strand, within Dsui_1979 at 2088.685 kb on - strand, within Dsui_1979 at 2088.709 kb on + strand at 2088.717 kb on - strand at 2088.727 kb on + strand at 2088.790 kb on - strand at 2089.161 kb on - strand at 2089.179 kb on + strand at 2089.234 kb on - strand at 2089.234 kb on - strand at 2089.289 kb on + strand at 2089.311 kb on - strand at 2089.350 kb on - strand, within Dsui_1980 at 2089.350 kb on - strand, within Dsui_1980 at 2089.410 kb on + strand, within Dsui_1980 at 2089.471 kb on - strand, within Dsui_1980 at 2089.482 kb on - strand, within Dsui_1980 at 2089.549 kb on - strand at 2089.569 kb on + strand at 2089.570 kb on - strand, within Dsui_1980 at 2089.610 kb on + strand, within Dsui_1980 at 2089.627 kb on - strand, within Dsui_1980 at 2089.639 kb on + strand, within Dsui_1980 at 2089.662 kb on - strand, within Dsui_1980 at 2089.674 kb on - strand, within Dsui_1980 at 2089.698 kb on + strand, within Dsui_1980 at 2089.752 kb on - strand at 2089.763 kb on - strand at 2089.773 kb on - strand at 2089.784 kb on + strand at 2089.875 kb on - strand at 2089.876 kb on - strand at 2089.876 kb on - strand at 2089.923 kb on + strand at 2089.939 kb on - strand at 2089.966 kb on + strand at 2090.011 kb on + strand, within Dsui_1981 at 2090.024 kb on - strand, within Dsui_1981 at 2090.026 kb on + strand, within Dsui_1981 at 2090.029 kb on - strand at 2090.029 kb on - strand at 2090.029 kb on - strand, within Dsui_1981 at 2090.039 kb on - strand, within Dsui_1981 at 2090.124 kb on - strand, within Dsui_1981 at 2090.185 kb on - strand, within Dsui_1981 at 2090.193 kb on + strand, within Dsui_1981 at 2090.201 kb on + strand, within Dsui_1981 at 2090.207 kb on + strand, within Dsui_1981 at 2090.225 kb on - strand, within Dsui_1981 at 2090.446 kb on + strand, within Dsui_1981 at 2090.472 kb on - strand, within Dsui_1981 at 2090.543 kb on + strand, within Dsui_1981 at 2090.543 kb on + strand, within Dsui_1981 at 2090.551 kb on - strand, within Dsui_1981 at 2090.564 kb on - strand, within Dsui_1981 at 2090.564 kb on - strand, within Dsui_1981 at 2090.587 kb on + strand, within Dsui_1981 at 2090.587 kb on + strand, within Dsui_1981 at 2090.587 kb on + strand, within Dsui_1981 at 2090.595 kb on - strand, within Dsui_1981 at 2090.595 kb on - strand, within Dsui_1981 at 2090.595 kb on - strand, within Dsui_1981 at 2090.596 kb on + strand, within Dsui_1981 at 2090.597 kb on + strand, within Dsui_1981 at 2090.706 kb on - strand, within Dsui_1981 at 2090.739 kb on - strand, within Dsui_1981
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 2,088,308 - Dsui_1979 0.38 -0.1 2,088,324 + Dsui_1979 0.40 +0.5 2,088,324 + Dsui_1979 0.40 +0.6 2,088,332 - Dsui_1979 0.41 -1.1 2,088,332 - Dsui_1979 0.41 -0.6 2,088,455 + Dsui_1979 0.57 +0.5 2,088,482 + Dsui_1979 0.61 +0.5 2,088,490 - Dsui_1979 0.62 +0.9 2,088,550 + Dsui_1979 0.70 +0.1 2,088,626 + Dsui_1979 0.79 +0.5 2,088,685 - Dsui_1979 0.87 -2.5 2,088,685 - Dsui_1979 0.87 -0.6 2,088,709 + +0.3 2,088,717 - +2.3 2,088,727 + +0.4 2,088,790 - -0.1 2,089,161 - -0.8 2,089,179 + +0.9 2,089,234 - -1.1 2,089,234 - -0.1 2,089,289 + -0.6 2,089,311 - -0.6 2,089,350 - Dsui_1980 0.16 +0.9 2,089,350 - Dsui_1980 0.16 -1.1 2,089,410 + Dsui_1980 0.28 +0.9 2,089,471 - Dsui_1980 0.41 +1.9 2,089,482 - Dsui_1980 0.44 -2.6 2,089,549 - +0.9 2,089,569 + +0.9 2,089,570 - Dsui_1980 0.62 +0.9 2,089,610 + Dsui_1980 0.71 -0.1 2,089,627 - Dsui_1980 0.74 -0.6 2,089,639 + Dsui_1980 0.77 -1.1 2,089,662 - Dsui_1980 0.82 +0.9 2,089,674 - Dsui_1980 0.84 -0.1 2,089,698 + Dsui_1980 0.89 -2.4 2,089,752 - -0.1 2,089,763 - +0.9 2,089,773 - -0.1 2,089,784 + +0.9 2,089,875 - +0.9 2,089,876 - -0.6 2,089,876 - -0.6 2,089,923 + +0.7 2,089,939 - +0.9 2,089,966 + +0.3 2,090,011 + Dsui_1981 0.11 +0.5 2,090,024 - Dsui_1981 0.12 +0.9 2,090,026 + Dsui_1981 0.12 +0.4 2,090,029 - +0.9 2,090,029 - -0.1 2,090,029 - Dsui_1981 0.12 -0.1 2,090,039 - Dsui_1981 0.13 +0.9 2,090,124 - Dsui_1981 0.19 +0.9 2,090,185 - Dsui_1981 0.24 -0.6 2,090,193 + Dsui_1981 0.25 -0.6 2,090,201 + Dsui_1981 0.25 +1.0 2,090,207 + Dsui_1981 0.26 +0.6 2,090,225 - Dsui_1981 0.27 +0.9 2,090,446 + Dsui_1981 0.44 +0.5 2,090,472 - Dsui_1981 0.46 +0.9 2,090,543 + Dsui_1981 0.52 -0.4 2,090,543 + Dsui_1981 0.52 -0.8 2,090,551 - Dsui_1981 0.52 -0.4 2,090,564 - Dsui_1981 0.53 -0.1 2,090,564 - Dsui_1981 0.53 -0.6 2,090,587 + Dsui_1981 0.55 +0.7 2,090,587 + Dsui_1981 0.55 +0.3 2,090,587 + Dsui_1981 0.55 +0.1 2,090,595 - Dsui_1981 0.56 +0.9 2,090,595 - Dsui_1981 0.56 -0.1 2,090,595 - Dsui_1981 0.56 +0.9 2,090,596 + Dsui_1981 0.56 +0.8 2,090,597 + Dsui_1981 0.56 +0.0 2,090,706 - Dsui_1981 0.64 -0.1 2,090,739 - Dsui_1981 0.67 +0.9
Or see this region's nucleotide sequence