Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1836 and Dsui_1837 are separated by 11 nucleotides Dsui_1837 and Dsui_1838 are separated by 1 nucleotides Dsui_1838 and Dsui_1839 are separated by 81 nucleotides
Dsui_1836: Dsui_1836 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,934,923 to 1,936,125
_1836
Dsui_1837: Dsui_1837 - cation/cationic drug transporter, at 1,936,137 to 1,936,463
_1837
Dsui_1838: Dsui_1838 - spermidine synthase, at 1,936,465 to 1,937,229
_1838
Dsui_1839: Dsui_1839 - hypothetical protein, at 1,937,311 to 1,937,706
_1839
Position (kb)
1936
1937 Strain fitness (log2 ratio)
-2
-1
0
1 at 1935.263 kb on + strand, within Dsui_1836 at 1935.302 kb on + strand, within Dsui_1836 at 1935.352 kb on + strand, within Dsui_1836 at 1935.416 kb on + strand, within Dsui_1836 at 1935.421 kb on + strand, within Dsui_1836 at 1935.421 kb on + strand, within Dsui_1836 at 1935.466 kb on - strand, within Dsui_1836 at 1935.567 kb on - strand, within Dsui_1836 at 1935.569 kb on - strand, within Dsui_1836 at 1935.577 kb on + strand, within Dsui_1836 at 1935.839 kb on + strand, within Dsui_1836 at 1935.844 kb on + strand, within Dsui_1836 at 1936.198 kb on - strand, within Dsui_1837 at 1936.235 kb on - strand, within Dsui_1837 at 1936.277 kb on + strand at 1936.353 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand at 1936.383 kb on + strand, within Dsui_1837 at 1936.664 kb on - strand, within Dsui_1838 at 1936.712 kb on - strand, within Dsui_1838 at 1936.756 kb on - strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.848 kb on + strand, within Dsui_1838 at 1936.989 kb on - strand, within Dsui_1838 at 1937.110 kb on - strand, within Dsui_1838 at 1937.112 kb on + strand, within Dsui_1838 at 1937.147 kb on + strand, within Dsui_1838 at 1937.223 kb on - strand at 1937.224 kb on + strand at 1937.243 kb on + strand at 1937.251 kb on - strand at 1937.266 kb on - strand at 1937.345 kb on + strand at 1937.353 kb on - strand, within Dsui_1839 at 1937.358 kb on - strand, within Dsui_1839
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 1,935,263 + Dsui_1836 0.28 -0.5 1,935,302 + Dsui_1836 0.32 -1.1 1,935,352 + Dsui_1836 0.36 -0.5 1,935,416 + Dsui_1836 0.41 -1.5 1,935,421 + Dsui_1836 0.41 -1.8 1,935,421 + Dsui_1836 0.41 -1.5 1,935,466 - Dsui_1836 0.45 +0.5 1,935,567 - Dsui_1836 0.54 +0.5 1,935,569 - Dsui_1836 0.54 -1.1 1,935,577 + Dsui_1836 0.54 -0.5 1,935,839 + Dsui_1836 0.76 +0.5 1,935,844 + Dsui_1836 0.77 +0.5 1,936,198 - Dsui_1837 0.19 -0.5 1,936,235 - Dsui_1837 0.30 +1.0 1,936,277 + +0.5 1,936,353 + Dsui_1837 0.66 +0.5 1,936,361 + Dsui_1837 0.69 -0.5 1,936,361 + +0.5 1,936,383 + Dsui_1837 0.75 -2.3 1,936,664 - Dsui_1838 0.26 +0.2 1,936,712 - Dsui_1838 0.32 +0.3 1,936,756 - Dsui_1838 0.38 -0.0 1,936,758 + Dsui_1838 0.38 -1.1 1,936,758 + Dsui_1838 0.38 -2.7 1,936,848 + Dsui_1838 0.50 -2.1 1,936,989 - Dsui_1838 0.68 -0.1 1,937,110 - Dsui_1838 0.84 +0.0 1,937,112 + Dsui_1838 0.85 -1.5 1,937,147 + Dsui_1838 0.89 -2.3 1,937,223 - +0.2 1,937,224 + -0.5 1,937,243 + -2.5 1,937,251 - +0.7 1,937,266 - -0.5 1,937,345 + +0.5 1,937,353 - Dsui_1839 0.11 -2.1 1,937,358 - Dsui_1839 0.12 -1.5
Or see this region's nucleotide sequence