Strain Fitness in Dechlorosoma suillum PS around Dsui_1456

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1455 and Dsui_1456 are separated by 10 nucleotidesDsui_1456 and Dsui_1457 are separated by 170 nucleotidesDsui_1457 and Dsui_1458 are separated by 101 nucleotides Dsui_1455: Dsui_1455 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,512,727 to 1,515,093 _1455 Dsui_1456: Dsui_1456 - HD-GYP domain-containing protein, at 1,515,104 to 1,516,692 _1456 Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258 _1457 Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851 _1458 Position (kb) 1515 1516 1517Strain fitness (log2 ratio) -3 -2 -1 0 1at 1514.113 kb on - strand, within Dsui_1455at 1514.191 kb on + strand, within Dsui_1455at 1514.199 kb on - strand, within Dsui_1455at 1514.199 kb on - strand, within Dsui_1455at 1514.199 kb on - strandat 1514.199 kb on - strandat 1514.201 kb on + strand, within Dsui_1455at 1514.201 kb on + strand, within Dsui_1455at 1514.209 kb on - strand, within Dsui_1455at 1514.209 kb on - strand, within Dsui_1455at 1514.209 kb on - strand, within Dsui_1455at 1514.215 kb on + strandat 1514.323 kb on + strand, within Dsui_1455at 1514.357 kb on - strand, within Dsui_1455at 1514.359 kb on + strand, within Dsui_1455at 1514.409 kb on - strandat 1514.440 kb on + strand, within Dsui_1455at 1514.491 kb on + strand, within Dsui_1455at 1514.683 kb on - strand, within Dsui_1455at 1514.727 kb on + strand, within Dsui_1455at 1514.744 kb on + strand, within Dsui_1455at 1514.749 kb on - strand, within Dsui_1455at 1514.808 kb on - strand, within Dsui_1455at 1514.853 kb on + strand, within Dsui_1455at 1514.921 kb on - strandat 1515.016 kb on - strandat 1515.050 kb on - strandat 1515.130 kb on - strandat 1515.132 kb on + strandat 1515.188 kb on - strandat 1515.370 kb on + strand, within Dsui_1456at 1515.378 kb on - strand, within Dsui_1456at 1515.496 kb on - strand, within Dsui_1456at 1515.604 kb on + strand, within Dsui_1456at 1515.719 kb on + strand, within Dsui_1456at 1515.925 kb on - strand, within Dsui_1456at 1515.947 kb on + strand, within Dsui_1456at 1516.225 kb on + strand, within Dsui_1456at 1516.291 kb on + strand, within Dsui_1456at 1516.357 kb on + strand, within Dsui_1456at 1516.385 kb on - strand, within Dsui_1456at 1516.432 kb on + strand, within Dsui_1456at 1516.541 kb on + strandat 1516.541 kb on + strandat 1516.559 kb on - strandat 1516.667 kb on + strandat 1516.809 kb on - strandat 1516.882 kb on + strandat 1516.887 kb on + strandat 1517.071 kb on + strand, within Dsui_1457at 1517.164 kb on - strandat 1517.318 kb on + strandat 1517.386 kb on + strandat 1517.407 kb on + strandat 1517.424 kb on + strand, within Dsui_1458at 1517.467 kb on - strand, within Dsui_1458at 1517.490 kb on + strand, within Dsui_1458at 1517.574 kb on + strand, within Dsui_1458at 1517.584 kb on + strand, within Dsui_1458at 1517.585 kb on + strand, within Dsui_1458at 1517.635 kb on + strand, within Dsui_1458at 1517.668 kb on + strand, within Dsui_1458at 1517.676 kb on - strand, within Dsui_1458at 1517.691 kb on - strand, within Dsui_1458

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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1,514,113 - Dsui_1455 0.59 -3.1
1,514,191 + Dsui_1455 0.62 -0.7
1,514,199 - Dsui_1455 0.62 -2.7
1,514,199 - Dsui_1455 0.62 +0.3
1,514,199 - +0.3
1,514,199 - +0.3
1,514,201 + Dsui_1455 0.62 -2.0
1,514,201 + Dsui_1455 0.62 -1.7
1,514,209 - Dsui_1455 0.63 +0.3
1,514,209 - Dsui_1455 0.63 -0.7
1,514,209 - Dsui_1455 0.63 -1.7
1,514,215 + +0.3
1,514,323 + Dsui_1455 0.67 -0.7
1,514,357 - Dsui_1455 0.69 +0.3
1,514,359 + Dsui_1455 0.69 +1.3
1,514,409 - +0.3
1,514,440 + Dsui_1455 0.72 -0.8
1,514,491 + Dsui_1455 0.75 +0.3
1,514,683 - Dsui_1455 0.83 +0.3
1,514,727 + Dsui_1455 0.84 -0.7
1,514,744 + Dsui_1455 0.85 -1.0
1,514,749 - Dsui_1455 0.85 -0.7
1,514,808 - Dsui_1455 0.88 -1.2
1,514,853 + Dsui_1455 0.90 +0.3
1,514,921 - -2.0
1,515,016 - -0.6
1,515,050 - -1.2
1,515,130 - +0.4
1,515,132 + -1.1
1,515,188 - -0.6
1,515,370 + Dsui_1456 0.17 -1.6
1,515,378 - Dsui_1456 0.17 -1.2
1,515,496 - Dsui_1456 0.25 -0.6
1,515,604 + Dsui_1456 0.31 -3.0
1,515,719 + Dsui_1456 0.39 -1.2
1,515,925 - Dsui_1456 0.52 +0.4
1,515,947 + Dsui_1456 0.53 -2.0
1,516,225 + Dsui_1456 0.71 -0.6
1,516,291 + Dsui_1456 0.75 +0.4
1,516,357 + Dsui_1456 0.79 -2.8
1,516,385 - Dsui_1456 0.81 +0.4
1,516,432 + Dsui_1456 0.84 +0.4
1,516,541 + +0.4
1,516,541 + -0.6
1,516,559 - -2.2
1,516,667 + -2.6
1,516,809 - +0.4
1,516,882 + -0.2
1,516,887 + -1.9
1,517,071 + Dsui_1457 0.53 +0.1
1,517,164 - -0.6
1,517,318 + -2.0
1,517,386 + +0.4
1,517,407 + -2.2
1,517,424 + Dsui_1458 0.13 +0.4
1,517,467 - Dsui_1458 0.22 +0.1
1,517,490 + Dsui_1458 0.26 -0.6
1,517,574 + Dsui_1458 0.43 -0.6
1,517,584 + Dsui_1458 0.46 -1.6
1,517,585 + Dsui_1458 0.46 -2.0
1,517,635 + Dsui_1458 0.56 +0.4
1,517,668 + Dsui_1458 0.63 +0.4
1,517,676 - Dsui_1458 0.64 -0.6
1,517,691 - Dsui_1458 0.67 +0.0

Or see this region's nucleotide sequence