Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1455 and Dsui_1456 are separated by 10 nucleotides Dsui_1456 and Dsui_1457 are separated by 170 nucleotides Dsui_1457 and Dsui_1458 are separated by 101 nucleotides
Dsui_1455: Dsui_1455 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,512,727 to 1,515,093
_1455
Dsui_1456: Dsui_1456 - HD-GYP domain-containing protein, at 1,515,104 to 1,516,692
_1456
Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258
_1457
Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851
_1458
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1514.113 kb on - strand, within Dsui_1455 at 1514.191 kb on + strand, within Dsui_1455 at 1514.199 kb on - strand, within Dsui_1455 at 1514.199 kb on - strand, within Dsui_1455 at 1514.199 kb on - strand at 1514.199 kb on - strand at 1514.201 kb on + strand, within Dsui_1455 at 1514.201 kb on + strand, within Dsui_1455 at 1514.209 kb on - strand, within Dsui_1455 at 1514.209 kb on - strand, within Dsui_1455 at 1514.209 kb on - strand, within Dsui_1455 at 1514.215 kb on + strand at 1514.323 kb on + strand, within Dsui_1455 at 1514.357 kb on - strand, within Dsui_1455 at 1514.359 kb on + strand, within Dsui_1455 at 1514.409 kb on - strand at 1514.440 kb on + strand, within Dsui_1455 at 1514.491 kb on + strand, within Dsui_1455 at 1514.683 kb on - strand, within Dsui_1455 at 1514.727 kb on + strand, within Dsui_1455 at 1514.744 kb on + strand, within Dsui_1455 at 1514.749 kb on - strand, within Dsui_1455 at 1514.808 kb on - strand, within Dsui_1455 at 1514.853 kb on + strand, within Dsui_1455 at 1514.921 kb on - strand at 1515.016 kb on - strand at 1515.050 kb on - strand at 1515.130 kb on - strand at 1515.132 kb on + strand at 1515.188 kb on - strand at 1515.370 kb on + strand, within Dsui_1456 at 1515.378 kb on - strand, within Dsui_1456 at 1515.496 kb on - strand, within Dsui_1456 at 1515.604 kb on + strand, within Dsui_1456 at 1515.719 kb on + strand, within Dsui_1456 at 1515.925 kb on - strand, within Dsui_1456 at 1515.947 kb on + strand, within Dsui_1456 at 1516.225 kb on + strand, within Dsui_1456 at 1516.291 kb on + strand, within Dsui_1456 at 1516.357 kb on + strand, within Dsui_1456 at 1516.385 kb on - strand, within Dsui_1456 at 1516.432 kb on + strand, within Dsui_1456 at 1516.541 kb on + strand at 1516.541 kb on + strand at 1516.559 kb on - strand at 1516.667 kb on + strand at 1516.809 kb on - strand at 1516.882 kb on + strand at 1516.887 kb on + strand at 1517.071 kb on + strand, within Dsui_1457 at 1517.164 kb on - strand at 1517.318 kb on + strand at 1517.386 kb on + strand at 1517.407 kb on + strand at 1517.424 kb on + strand, within Dsui_1458 at 1517.467 kb on - strand, within Dsui_1458 at 1517.490 kb on + strand, within Dsui_1458 at 1517.574 kb on + strand, within Dsui_1458 at 1517.584 kb on + strand, within Dsui_1458 at 1517.585 kb on + strand, within Dsui_1458 at 1517.635 kb on + strand, within Dsui_1458 at 1517.668 kb on + strand, within Dsui_1458 at 1517.676 kb on - strand, within Dsui_1458 at 1517.691 kb on - strand, within Dsui_1458
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 1,514,113 - Dsui_1455 0.59 -3.1 1,514,191 + Dsui_1455 0.62 -0.7 1,514,199 - Dsui_1455 0.62 -2.7 1,514,199 - Dsui_1455 0.62 +0.3 1,514,199 - +0.3 1,514,199 - +0.3 1,514,201 + Dsui_1455 0.62 -2.0 1,514,201 + Dsui_1455 0.62 -1.7 1,514,209 - Dsui_1455 0.63 +0.3 1,514,209 - Dsui_1455 0.63 -0.7 1,514,209 - Dsui_1455 0.63 -1.7 1,514,215 + +0.3 1,514,323 + Dsui_1455 0.67 -0.7 1,514,357 - Dsui_1455 0.69 +0.3 1,514,359 + Dsui_1455 0.69 +1.3 1,514,409 - +0.3 1,514,440 + Dsui_1455 0.72 -0.8 1,514,491 + Dsui_1455 0.75 +0.3 1,514,683 - Dsui_1455 0.83 +0.3 1,514,727 + Dsui_1455 0.84 -0.7 1,514,744 + Dsui_1455 0.85 -1.0 1,514,749 - Dsui_1455 0.85 -0.7 1,514,808 - Dsui_1455 0.88 -1.2 1,514,853 + Dsui_1455 0.90 +0.3 1,514,921 - -2.0 1,515,016 - -0.6 1,515,050 - -1.2 1,515,130 - +0.4 1,515,132 + -1.1 1,515,188 - -0.6 1,515,370 + Dsui_1456 0.17 -1.6 1,515,378 - Dsui_1456 0.17 -1.2 1,515,496 - Dsui_1456 0.25 -0.6 1,515,604 + Dsui_1456 0.31 -3.0 1,515,719 + Dsui_1456 0.39 -1.2 1,515,925 - Dsui_1456 0.52 +0.4 1,515,947 + Dsui_1456 0.53 -2.0 1,516,225 + Dsui_1456 0.71 -0.6 1,516,291 + Dsui_1456 0.75 +0.4 1,516,357 + Dsui_1456 0.79 -2.8 1,516,385 - Dsui_1456 0.81 +0.4 1,516,432 + Dsui_1456 0.84 +0.4 1,516,541 + +0.4 1,516,541 + -0.6 1,516,559 - -2.2 1,516,667 + -2.6 1,516,809 - +0.4 1,516,882 + -0.2 1,516,887 + -1.9 1,517,071 + Dsui_1457 0.53 +0.1 1,517,164 - -0.6 1,517,318 + -2.0 1,517,386 + +0.4 1,517,407 + -2.2 1,517,424 + Dsui_1458 0.13 +0.4 1,517,467 - Dsui_1458 0.22 +0.1 1,517,490 + Dsui_1458 0.26 -0.6 1,517,574 + Dsui_1458 0.43 -0.6 1,517,584 + Dsui_1458 0.46 -1.6 1,517,585 + Dsui_1458 0.46 -2.0 1,517,635 + Dsui_1458 0.56 +0.4 1,517,668 + Dsui_1458 0.63 +0.4 1,517,676 - Dsui_1458 0.64 -0.6 1,517,691 - Dsui_1458 0.67 +0.0
Or see this region's nucleotide sequence