Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0945 and Dsui_0946 are separated by 10 nucleotides Dsui_0946 and Dsui_0947 are separated by 5 nucleotides Dsui_0947 and Dsui_0948 are separated by 5 nucleotides Dsui_0948 and Dsui_0949 are separated by 40 nucleotides Dsui_0949 and Dsui_0950 overlap by 4 nucleotides
Dsui_0945: Dsui_0945 - Iron-sulfur cluster assembly accessory protein, at 973,640 to 974,056
_0945
Dsui_0946: Dsui_0946 - putative nitrogen fixation protein FixT, at 974,067 to 974,561
_0946
Dsui_0947: Dsui_0947 - hypothetical protein, at 974,567 to 975,425
_0947
Dsui_0948: Dsui_0948 - hypothetical protein, at 975,431 to 975,850
_0948
Dsui_0949: Dsui_0949 - hypothetical protein, at 975,891 to 976,106
_0949
Dsui_0950: Dsui_0950 - acyl dehydratase, at 976,103 to 976,603
_0950
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 973.580 kb on - strand at 973.588 kb on + strand at 973.588 kb on + strand at 973.596 kb on + strand at 973.816 kb on + strand, within Dsui_0945 at 973.864 kb on + strand, within Dsui_0945 at 973.907 kb on - strand, within Dsui_0945 at 974.081 kb on - strand at 974.207 kb on - strand, within Dsui_0946 at 974.265 kb on + strand, within Dsui_0946 at 974.340 kb on - strand, within Dsui_0946 at 974.340 kb on - strand at 974.523 kb on - strand at 974.647 kb on + strand at 974.694 kb on - strand, within Dsui_0947 at 974.771 kb on + strand, within Dsui_0947 at 974.877 kb on + strand, within Dsui_0947 at 974.959 kb on + strand, within Dsui_0947 at 975.083 kb on - strand, within Dsui_0947 at 975.355 kb on - strand at 975.410 kb on - strand at 975.468 kb on + strand at 975.543 kb on + strand at 975.590 kb on + strand, within Dsui_0948 at 975.599 kb on - strand at 975.918 kb on - strand, within Dsui_0949 at 976.147 kb on + strand at 976.398 kb on + strand, within Dsui_0950
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 973,580 - -1.7 973,588 + -0.7 973,588 + +0.3 973,596 + -0.7 973,816 + Dsui_0945 0.42 +0.3 973,864 + Dsui_0945 0.54 -3.4 973,907 - Dsui_0945 0.64 -1.2 974,081 - -2.2 974,207 - Dsui_0946 0.28 -0.7 974,265 + Dsui_0946 0.40 -2.8 974,340 - Dsui_0946 0.55 -0.7 974,340 - +0.3 974,523 - -0.7 974,647 + -0.7 974,694 - Dsui_0947 0.15 -1.3 974,771 + Dsui_0947 0.24 -1.3 974,877 + Dsui_0947 0.36 -0.7 974,959 + Dsui_0947 0.46 +0.3 975,083 - Dsui_0947 0.60 -1.3 975,355 - +1.3 975,410 - -0.7 975,468 + -1.3 975,543 + +0.3 975,590 + Dsui_0948 0.38 -0.7 975,599 - +0.3 975,918 - Dsui_0949 0.12 +0.3 976,147 + +0.3 976,398 + Dsui_0950 0.59 -1.4
Or see this region's nucleotide sequence