Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0803 and Dsui_0804 are separated by 10 nucleotides Dsui_0804 and Dsui_0805 are separated by 200 nucleotides
Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168
_0803
Dsui_0804: Dsui_0804 - hypothetical protein, at 811,179 to 812,312
_0804
Dsui_0805: Dsui_0805 - primosomal protein N'', at 812,513 to 814,537
_0805
Position (kb)
811
812
813 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 810.228 kb on + strand, within Dsui_0803 at 810.235 kb on + strand, within Dsui_0803 at 810.236 kb on - strand, within Dsui_0803 at 810.305 kb on - strand, within Dsui_0803 at 810.336 kb on + strand, within Dsui_0803 at 810.343 kb on + strand, within Dsui_0803 at 810.389 kb on + strand, within Dsui_0803 at 810.422 kb on + strand, within Dsui_0803 at 810.425 kb on - strand at 810.505 kb on + strand, within Dsui_0803 at 810.528 kb on - strand, within Dsui_0803 at 810.543 kb on + strand, within Dsui_0803 at 810.578 kb on - strand, within Dsui_0803 at 810.611 kb on - strand, within Dsui_0803 at 810.624 kb on - strand, within Dsui_0803 at 810.657 kb on + strand, within Dsui_0803 at 810.675 kb on + strand, within Dsui_0803 at 810.675 kb on + strand, within Dsui_0803 at 810.704 kb on - strand, within Dsui_0803 at 810.715 kb on - strand, within Dsui_0803 at 810.740 kb on - strand, within Dsui_0803 at 810.743 kb on + strand, within Dsui_0803 at 810.746 kb on - strand, within Dsui_0803 at 810.751 kb on - strand, within Dsui_0803 at 810.751 kb on - strand, within Dsui_0803 at 810.752 kb on - strand, within Dsui_0803 at 810.768 kb on + strand, within Dsui_0803 at 810.776 kb on - strand, within Dsui_0803 at 810.776 kb on - strand, within Dsui_0803 at 810.776 kb on - strand, within Dsui_0803 at 810.779 kb on + strand, within Dsui_0803 at 810.784 kb on + strand, within Dsui_0803 at 810.848 kb on - strand, within Dsui_0803 at 810.867 kb on - strand, within Dsui_0803 at 810.904 kb on + strand, within Dsui_0803 at 810.923 kb on + strand, within Dsui_0803 at 810.961 kb on + strand at 810.991 kb on + strand at 810.998 kb on + strand at 811.057 kb on - strand at 811.059 kb on + strand at 811.059 kb on + strand at 811.069 kb on + strand at 811.083 kb on - strand at 811.170 kb on - strand at 811.171 kb on - strand at 811.184 kb on - strand at 811.196 kb on - strand at 811.218 kb on - strand at 811.225 kb on + strand at 811.243 kb on - strand at 811.265 kb on + strand at 811.350 kb on + strand, within Dsui_0804 at 811.362 kb on + strand, within Dsui_0804 at 811.379 kb on - strand, within Dsui_0804 at 811.526 kb on + strand, within Dsui_0804 at 811.589 kb on + strand, within Dsui_0804 at 811.600 kb on + strand, within Dsui_0804 at 811.625 kb on + strand, within Dsui_0804 at 811.731 kb on + strand at 811.746 kb on - strand, within Dsui_0804 at 811.815 kb on + strand, within Dsui_0804 at 811.847 kb on + strand, within Dsui_0804 at 811.855 kb on - strand, within Dsui_0804 at 811.855 kb on - strand, within Dsui_0804 at 811.880 kb on + strand, within Dsui_0804 at 811.884 kb on + strand, within Dsui_0804 at 811.884 kb on + strand at 811.892 kb on - strand, within Dsui_0804 at 811.894 kb on - strand, within Dsui_0804 at 811.902 kb on - strand, within Dsui_0804 at 811.945 kb on + strand, within Dsui_0804 at 811.953 kb on - strand, within Dsui_0804 at 811.955 kb on + strand, within Dsui_0804 at 811.963 kb on - strand, within Dsui_0804 at 811.970 kb on + strand, within Dsui_0804 at 811.970 kb on + strand, within Dsui_0804 at 811.978 kb on - strand, within Dsui_0804 at 812.012 kb on - strand, within Dsui_0804 at 812.063 kb on + strand, within Dsui_0804 at 812.063 kb on + strand, within Dsui_0804 at 812.153 kb on + strand, within Dsui_0804 at 812.232 kb on - strand at 812.266 kb on + strand at 812.332 kb on - strand at 812.346 kb on + strand at 812.353 kb on - strand at 812.354 kb on - strand at 812.459 kb on - strand at 812.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 810,228 + Dsui_0803 0.58 +0.3 810,235 + Dsui_0803 0.59 -0.7 810,236 - Dsui_0803 0.59 +0.3 810,305 - Dsui_0803 0.62 -3.0 810,336 + Dsui_0803 0.63 -1.8 810,343 + Dsui_0803 0.63 -1.0 810,389 + Dsui_0803 0.65 +1.9 810,422 + Dsui_0803 0.67 +1.1 810,425 - +0.3 810,505 + Dsui_0803 0.71 +2.1 810,528 - Dsui_0803 0.72 -0.9 810,543 + Dsui_0803 0.72 -0.7 810,578 - Dsui_0803 0.74 -1.3 810,611 - Dsui_0803 0.75 +0.3 810,624 - Dsui_0803 0.76 +1.3 810,657 + Dsui_0803 0.77 -0.4 810,675 + Dsui_0803 0.78 -2.0 810,675 + Dsui_0803 0.78 +0.7 810,704 - Dsui_0803 0.79 -2.3 810,715 - Dsui_0803 0.80 +0.3 810,740 - Dsui_0803 0.81 -0.7 810,743 + Dsui_0803 0.81 +1.1 810,746 - Dsui_0803 0.81 -2.7 810,751 - Dsui_0803 0.81 +0.1 810,751 - Dsui_0803 0.81 -1.2 810,752 - Dsui_0803 0.81 -1.3 810,768 + Dsui_0803 0.82 -0.3 810,776 - Dsui_0803 0.83 -0.7 810,776 - Dsui_0803 0.83 -2.3 810,776 - Dsui_0803 0.83 -1.3 810,779 + Dsui_0803 0.83 -1.4 810,784 + Dsui_0803 0.83 -0.5 810,848 - Dsui_0803 0.86 +0.3 810,867 - Dsui_0803 0.87 -0.7 810,904 + Dsui_0803 0.88 +0.1 810,923 + Dsui_0803 0.89 -0.3 810,961 + +1.0 810,991 + -0.7 810,998 + +0.6 811,057 - -0.7 811,059 + -1.2 811,059 + +0.3 811,069 + +0.0 811,083 - -2.0 811,170 - -0.6 811,171 - +1.3 811,184 - -1.1 811,196 - -1.5 811,218 - -0.7 811,225 + -1.2 811,243 - -1.1 811,265 + -1.9 811,350 + Dsui_0804 0.15 -0.7 811,362 + Dsui_0804 0.16 -0.7 811,379 - Dsui_0804 0.18 +0.3 811,526 + Dsui_0804 0.31 -1.3 811,589 + Dsui_0804 0.36 -1.3 811,600 + Dsui_0804 0.37 -0.9 811,625 + Dsui_0804 0.39 -2.3 811,731 + -0.7 811,746 - Dsui_0804 0.50 -0.7 811,815 + Dsui_0804 0.56 +0.3 811,847 + Dsui_0804 0.59 -1.7 811,855 - Dsui_0804 0.60 -1.3 811,855 - Dsui_0804 0.60 -0.3 811,880 + Dsui_0804 0.62 -1.3 811,884 + Dsui_0804 0.62 -1.7 811,884 + +0.3 811,892 - Dsui_0804 0.63 +0.3 811,894 - Dsui_0804 0.63 -1.7 811,902 - Dsui_0804 0.64 +0.3 811,945 + Dsui_0804 0.68 -0.7 811,953 - Dsui_0804 0.68 +0.3 811,955 + Dsui_0804 0.68 -0.7 811,963 - Dsui_0804 0.69 -1.7 811,970 + Dsui_0804 0.70 -2.3 811,970 + Dsui_0804 0.70 -2.7 811,978 - Dsui_0804 0.70 -1.0 812,012 - Dsui_0804 0.73 -1.7 812,063 + Dsui_0804 0.78 -2.5 812,063 + Dsui_0804 0.78 -0.7 812,153 + Dsui_0804 0.86 +0.3 812,232 - -0.3 812,266 + -0.7 812,332 - +0.3 812,346 + -2.0 812,353 - -0.3 812,354 - -0.1 812,459 - -1.1 812,485 - +0.3
Or see this region's nucleotide sequence