Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0747 and Dsui_0748 are separated by 173 nucleotides Dsui_0748 and Dsui_0749 overlap by 4 nucleotides
Dsui_0747: Dsui_0747 - glutamate--cysteine ligase, at 744,850 to 746,130
_0747
Dsui_0748: Dsui_0748 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 746,304 to 747,302
_0748
Dsui_0749: Dsui_0749 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 747,299 to 750,160
_0749
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 745.607 kb on - strand, within Dsui_0747 at 745.614 kb on + strand at 745.683 kb on + strand, within Dsui_0747 at 745.701 kb on + strand, within Dsui_0747 at 745.709 kb on - strand, within Dsui_0747 at 745.976 kb on - strand, within Dsui_0747 at 746.091 kb on + strand at 746.301 kb on + strand at 746.301 kb on + strand at 746.301 kb on + strand at 746.309 kb on - strand at 746.309 kb on - strand at 746.309 kb on - strand at 746.309 kb on - strand at 746.358 kb on + strand at 746.493 kb on - strand, within Dsui_0748 at 746.557 kb on - strand, within Dsui_0748 at 746.593 kb on + strand, within Dsui_0748 at 746.614 kb on + strand, within Dsui_0748 at 746.667 kb on + strand, within Dsui_0748 at 746.710 kb on - strand at 746.710 kb on - strand, within Dsui_0748 at 746.710 kb on - strand at 746.754 kb on - strand at 746.783 kb on + strand, within Dsui_0748 at 746.862 kb on + strand, within Dsui_0748 at 746.919 kb on + strand, within Dsui_0748 at 746.940 kb on + strand, within Dsui_0748 at 747.108 kb on - strand, within Dsui_0748 at 747.110 kb on + strand, within Dsui_0748 at 747.110 kb on + strand, within Dsui_0748 at 747.127 kb on + strand, within Dsui_0748 at 747.127 kb on + strand, within Dsui_0748 at 747.162 kb on - strand, within Dsui_0748 at 747.311 kb on + strand at 747.404 kb on + strand at 747.523 kb on + strand at 747.576 kb on + strand at 747.580 kb on + strand at 747.606 kb on - strand, within Dsui_0749 at 747.655 kb on - strand, within Dsui_0749 at 747.698 kb on + strand, within Dsui_0749 at 747.724 kb on + strand, within Dsui_0749 at 747.797 kb on - strand at 747.813 kb on - strand, within Dsui_0749 at 747.868 kb on - strand at 747.898 kb on - strand, within Dsui_0749 at 747.902 kb on + strand, within Dsui_0749 at 748.068 kb on + strand, within Dsui_0749 at 748.070 kb on - strand, within Dsui_0749 at 748.099 kb on + strand, within Dsui_0749 at 748.138 kb on - strand at 748.148 kb on - strand at 748.191 kb on + strand, within Dsui_0749 at 748.199 kb on + strand, within Dsui_0749 at 748.239 kb on + strand, within Dsui_0749 at 748.270 kb on - strand, within Dsui_0749 at 748.271 kb on - strand, within Dsui_0749 at 748.302 kb on - strand, within Dsui_0749
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 745,607 - Dsui_0747 0.59 +5.6 745,614 + -0.8 745,683 + Dsui_0747 0.65 -2.8 745,701 + Dsui_0747 0.66 -1.3 745,709 - Dsui_0747 0.67 +5.6 745,976 - Dsui_0747 0.88 +5.7 746,091 + +0.2 746,301 + -0.5 746,301 + -0.1 746,301 + +0.1 746,309 - +0.2 746,309 - +0.2 746,309 - +0.2 746,309 - -0.8 746,358 + +0.2 746,493 - Dsui_0748 0.19 +0.2 746,557 - Dsui_0748 0.25 +0.2 746,593 + Dsui_0748 0.29 +0.0 746,614 + Dsui_0748 0.31 -0.1 746,667 + Dsui_0748 0.36 -0.5 746,710 - +0.2 746,710 - Dsui_0748 0.41 +0.2 746,710 - -0.8 746,754 - +0.2 746,783 + Dsui_0748 0.48 +0.6 746,862 + Dsui_0748 0.56 +0.0 746,919 + Dsui_0748 0.62 +0.2 746,940 + Dsui_0748 0.64 -0.1 747,108 - Dsui_0748 0.80 -1.3 747,110 + Dsui_0748 0.81 -0.4 747,110 + Dsui_0748 0.81 -0.4 747,127 + Dsui_0748 0.82 -0.5 747,127 + Dsui_0748 0.82 +1.0 747,162 - Dsui_0748 0.86 -3.3 747,311 + +0.1 747,404 + -0.1 747,523 + +1.2 747,576 + +0.4 747,580 + +0.4 747,606 - Dsui_0749 0.11 -2.9 747,655 - Dsui_0749 0.12 -2.1 747,698 + Dsui_0749 0.14 -1.3 747,724 + Dsui_0749 0.15 -0.2 747,797 - +0.2 747,813 - Dsui_0749 0.18 +0.2 747,868 - +0.2 747,898 - Dsui_0749 0.21 -1.8 747,902 + Dsui_0749 0.21 -0.5 748,068 + Dsui_0749 0.27 -0.3 748,070 - Dsui_0749 0.27 -0.8 748,099 + Dsui_0749 0.28 -0.2 748,138 - -0.8 748,148 - +0.2 748,191 + Dsui_0749 0.31 -0.6 748,199 + Dsui_0749 0.31 +0.8 748,239 + Dsui_0749 0.33 -0.1 748,270 - Dsui_0749 0.34 -1.8 748,271 - Dsui_0749 0.34 -0.8 748,302 - Dsui_0749 0.35 -0.8
Or see this region's nucleotide sequence