Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0576 and Dsui_0577 overlap by 8 nucleotides Dsui_0577 and Dsui_0578 are separated by 14 nucleotides Dsui_0578 and Dsui_0579 are separated by 211 nucleotides
Dsui_0576: Dsui_0576 - electron transfer flavoprotein, beta subunit, at 574,295 to 575,140
_0576
Dsui_0577: Dsui_0577 - Nitrogen fixation protein NifW, at 575,133 to 575,465
_0577
Dsui_0578: Dsui_0578 - homocitrate synthase NifV, at 575,480 to 576,634
_0578
Dsui_0579: Dsui_0579 - putative permease, at 576,846 to 577,721
_0579
Position (kb)
575
576
577 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 574.519 kb on + strand, within Dsui_0576 at 574.591 kb on - strand, within Dsui_0576 at 574.592 kb on - strand, within Dsui_0576 at 575.106 kb on + strand at 575.116 kb on + strand at 575.124 kb on - strand at 575.135 kb on + strand at 575.150 kb on + strand at 575.150 kb on + strand at 575.195 kb on - strand, within Dsui_0577 at 575.329 kb on + strand, within Dsui_0577 at 575.348 kb on + strand, within Dsui_0577 at 575.348 kb on + strand, within Dsui_0577 at 575.467 kb on + strand at 575.470 kb on - strand at 575.556 kb on - strand at 575.578 kb on - strand at 575.604 kb on - strand, within Dsui_0578 at 575.628 kb on - strand, within Dsui_0578 at 575.706 kb on + strand, within Dsui_0578 at 575.962 kb on + strand, within Dsui_0578 at 575.977 kb on - strand, within Dsui_0578 at 575.982 kb on + strand, within Dsui_0578 at 575.990 kb on - strand, within Dsui_0578 at 576.216 kb on - strand, within Dsui_0578 at 576.271 kb on - strand, within Dsui_0578 at 576.399 kb on - strand, within Dsui_0578 at 576.424 kb on + strand, within Dsui_0578 at 576.431 kb on - strand, within Dsui_0578 at 576.450 kb on - strand, within Dsui_0578 at 576.609 kb on + strand at 576.649 kb on - strand at 576.787 kb on - strand at 576.788 kb on - strand at 576.789 kb on + strand at 576.789 kb on + strand at 576.906 kb on - strand at 576.927 kb on + strand at 576.999 kb on + strand, within Dsui_0579 at 577.006 kb on + strand, within Dsui_0579 at 577.194 kb on + strand, within Dsui_0579 at 577.194 kb on + strand, within Dsui_0579 at 577.315 kb on - strand, within Dsui_0579 at 577.342 kb on - strand, within Dsui_0579 at 577.360 kb on - strand, within Dsui_0579 at 577.373 kb on - strand, within Dsui_0579 at 577.457 kb on - strand, within Dsui_0579 at 577.482 kb on - strand, within Dsui_0579
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 574,519 + Dsui_0576 0.26 +0.2 574,591 - Dsui_0576 0.35 +0.2 574,592 - Dsui_0576 0.35 +0.2 575,106 + -0.8 575,116 + +0.2 575,124 - +0.2 575,135 + -1.8 575,150 + -0.8 575,150 + +0.2 575,195 - Dsui_0577 0.19 -3.6 575,329 + Dsui_0577 0.59 +0.2 575,348 + Dsui_0577 0.65 +0.2 575,348 + Dsui_0577 0.65 +0.2 575,467 + -0.8 575,470 - -0.7 575,556 - -0.8 575,578 - -2.6 575,604 - Dsui_0578 0.11 -1.3 575,628 - Dsui_0578 0.13 +0.2 575,706 + Dsui_0578 0.20 -1.8 575,962 + Dsui_0578 0.42 -1.3 575,977 - Dsui_0578 0.43 -0.8 575,982 + Dsui_0578 0.43 +0.2 575,990 - Dsui_0578 0.44 -2.1 576,216 - Dsui_0578 0.64 -1.8 576,271 - Dsui_0578 0.68 +0.2 576,399 - Dsui_0578 0.80 +0.2 576,424 + Dsui_0578 0.82 -2.1 576,431 - Dsui_0578 0.82 +0.2 576,450 - Dsui_0578 0.84 +0.2 576,609 + -0.8 576,649 - -1.3 576,787 - -0.9 576,788 - +0.2 576,789 + -0.8 576,789 + -0.8 576,906 - -0.0 576,927 + +0.2 576,999 + Dsui_0579 0.17 +0.2 577,006 + Dsui_0579 0.18 -1.4 577,194 + Dsui_0579 0.40 -1.4 577,194 + Dsui_0579 0.40 -0.5 577,315 - Dsui_0579 0.54 -0.4 577,342 - Dsui_0579 0.57 +0.0 577,360 - Dsui_0579 0.59 -0.0 577,373 - Dsui_0579 0.60 +0.0 577,457 - Dsui_0579 0.70 -0.4 577,482 - Dsui_0579 0.73 -0.2
Or see this region's nucleotide sequence