Strain Fitness in Dechlorosoma suillum PS around Dsui_0296

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0295 and Dsui_0296 overlap by 4 nucleotidesDsui_0296 and Dsui_0297 are separated by 250 nucleotides Dsui_0295: Dsui_0295 - hypothetical protein, at 294,940 to 297,729 _0295 Dsui_0296: Dsui_0296 - hypothetical protein, at 297,726 to 298,508 _0296 Dsui_0297: Dsui_0297 - sugar fermentation stimulation protein, at 298,759 to 299,478 _0297 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1at 296.896 kb on + strandat 296.898 kb on - strand, within Dsui_0295at 297.308 kb on + strandat 297.400 kb on - strandat 297.480 kb on + strandat 297.516 kb on + strandat 297.618 kb on - strandat 297.767 kb on + strandat 297.801 kb on + strandat 297.868 kb on - strandat 297.879 kb on + strand, within Dsui_0296at 298.136 kb on - strandat 298.141 kb on - strand, within Dsui_0296at 298.146 kb on - strand, within Dsui_0296at 298.416 kb on - strandat 298.452 kb on + strandat 298.517 kb on + strandat 298.830 kb on - strandat 298.860 kb on + strand, within Dsui_0297at 298.860 kb on + strandat 298.938 kb on - strand, within Dsui_0297at 298.960 kb on - strand, within Dsui_0297at 298.960 kb on - strand, within Dsui_0297at 298.986 kb on + strandat 298.991 kb on - strand, within Dsui_0297at 299.249 kb on + strand, within Dsui_0297at 299.284 kb on + strand, within Dsui_0297at 299.346 kb on - strandat 299.369 kb on + strandat 299.409 kb on + strandat 299.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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296,896 + +0.3
296,898 - Dsui_0295 0.70 -0.3
297,308 + +0.3
297,400 - +0.3
297,480 + -0.7
297,516 + -0.7
297,618 - -1.3
297,767 + +0.8
297,801 + -1.3
297,868 - -0.7
297,879 + Dsui_0296 0.20 -1.7
298,136 - -0.7
298,141 - Dsui_0296 0.53 -2.1
298,146 - Dsui_0296 0.54 -0.7
298,416 - +0.3
298,452 + -0.7
298,517 + -2.1
298,830 - +0.3
298,860 + Dsui_0297 0.14 -2.1
298,860 + -0.7
298,938 - Dsui_0297 0.25 -2.1
298,960 - Dsui_0297 0.28 +0.3
298,960 - Dsui_0297 0.28 -1.0
298,986 + +0.3
298,991 - Dsui_0297 0.32 -2.3
299,249 + Dsui_0297 0.68 -1.7
299,284 + Dsui_0297 0.73 +0.3
299,346 - -0.7
299,369 + +0.3
299,409 + -1.7
299,464 - -0.2

Or see this region's nucleotide sequence