Strain Fitness in Dechlorosoma suillum PS around Dsui_0113

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0112 and Dsui_0113 are separated by 21 nucleotidesDsui_0113 and Dsui_0114 are separated by 13 nucleotides Dsui_0112: Dsui_0112 - serine/threonine protein kinase, at 110,720 to 112,012 _0112 Dsui_0113: Dsui_0113 - hypothetical protein, at 112,034 to 112,297 _0113 Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750 _0114 Position (kb) 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 111.045 kb on + strand, within Dsui_0112at 111.048 kb on + strand, within Dsui_0112at 111.148 kb on - strand, within Dsui_0112at 111.171 kb on - strand, within Dsui_0112at 111.262 kb on - strand, within Dsui_0112at 111.274 kb on + strand, within Dsui_0112at 111.335 kb on - strand, within Dsui_0112at 111.440 kb on - strand, within Dsui_0112at 111.472 kb on + strand, within Dsui_0112at 111.480 kb on - strand, within Dsui_0112at 111.504 kb on - strand, within Dsui_0112at 111.507 kb on + strand, within Dsui_0112at 111.515 kb on - strand, within Dsui_0112at 111.532 kb on + strand, within Dsui_0112at 111.540 kb on - strandat 111.654 kb on - strandat 111.656 kb on + strand, within Dsui_0112at 111.664 kb on - strand, within Dsui_0112at 111.738 kb on - strand, within Dsui_0112at 111.753 kb on + strand, within Dsui_0112at 111.866 kb on + strand, within Dsui_0112at 111.867 kb on + strand, within Dsui_0112at 111.877 kb on + strand, within Dsui_0112at 111.885 kb on - strandat 111.892 kb on + strandat 111.905 kb on + strandat 111.910 kb on + strandat 111.988 kb on - strandat 112.040 kb on - strandat 112.052 kb on - strandat 112.059 kb on + strandat 112.060 kb on - strandat 112.228 kb on + strand, within Dsui_0113at 112.236 kb on - strand, within Dsui_0113at 112.268 kb on - strandat 112.299 kb on + strandat 112.300 kb on - strandat 112.300 kb on - strandat 112.300 kb on - strandat 112.385 kb on + strandat 112.389 kb on - strandat 112.431 kb on + strandat 112.434 kb on - strandat 112.562 kb on + strand, within Dsui_0114at 112.562 kb on + strand, within Dsui_0114at 112.570 kb on - strand, within Dsui_0114at 112.601 kb on - strandat 112.613 kb on + strand, within Dsui_0114at 112.620 kb on + strand, within Dsui_0114at 112.623 kb on - strand, within Dsui_0114at 112.740 kb on + strandat 112.748 kb on - strand, within Dsui_0114at 112.763 kb on - strand, within Dsui_0114at 112.886 kb on - strandat 112.913 kb on - strand, within Dsui_0114at 112.918 kb on - strand, within Dsui_0114at 112.928 kb on - strand, within Dsui_0114at 112.935 kb on + strand, within Dsui_0114at 112.941 kb on + strandat 112.949 kb on - strand, within Dsui_0114at 112.966 kb on + strandat 112.990 kb on + strand, within Dsui_0114at 112.990 kb on + strandat 112.990 kb on + strand, within Dsui_0114at 113.030 kb on + strand, within Dsui_0114at 113.115 kb on + strandat 113.146 kb on + strandat 113.173 kb on - strand, within Dsui_0114at 113.187 kb on + strand, within Dsui_0114at 113.255 kb on + strandat 113.287 kb on - strand, within Dsui_0114

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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111,045 + Dsui_0112 0.25 -0.7
111,048 + Dsui_0112 0.25 -3.8
111,148 - Dsui_0112 0.33 -1.7
111,171 - Dsui_0112 0.35 +0.3
111,262 - Dsui_0112 0.42 -2.0
111,274 + Dsui_0112 0.43 -1.3
111,335 - Dsui_0112 0.48 +0.3
111,440 - Dsui_0112 0.56 +0.3
111,472 + Dsui_0112 0.58 -0.7
111,480 - Dsui_0112 0.59 -2.5
111,504 - Dsui_0112 0.61 -3.3
111,507 + Dsui_0112 0.61 -0.8
111,515 - Dsui_0112 0.61 -1.3
111,532 + Dsui_0112 0.63 -1.7
111,540 - +0.3
111,654 - +0.3
111,656 + Dsui_0112 0.72 -0.2
111,664 - Dsui_0112 0.73 +0.3
111,738 - Dsui_0112 0.79 -1.7
111,753 + Dsui_0112 0.80 -1.7
111,866 + Dsui_0112 0.89 -1.3
111,867 + Dsui_0112 0.89 +0.0
111,877 + Dsui_0112 0.89 +0.3
111,885 - +0.3
111,892 + -1.7
111,905 + -1.7
111,910 + -0.7
111,988 - +0.3
112,040 - -2.0
112,052 - -1.7
112,059 + -0.7
112,060 - -0.7
112,228 + Dsui_0113 0.73 +0.3
112,236 - Dsui_0113 0.77 -0.7
112,268 - +0.3
112,299 + +0.3
112,300 - +0.3
112,300 - -2.8
112,300 - +0.3
112,385 + -0.7
112,389 - -2.5
112,431 + +0.3
112,434 - +0.3
112,562 + Dsui_0114 0.17 +0.3
112,562 + Dsui_0114 0.17 -2.5
112,570 - Dsui_0114 0.18 -0.7
112,601 - +0.3
112,613 + Dsui_0114 0.21 +0.3
112,620 + Dsui_0114 0.21 -0.7
112,623 - Dsui_0114 0.22 -0.7
112,740 + -1.3
112,748 - Dsui_0114 0.30 -1.3
112,763 - Dsui_0114 0.31 -1.3
112,886 - +0.3
112,913 - Dsui_0114 0.42 -0.7
112,918 - Dsui_0114 0.42 -0.7
112,928 - Dsui_0114 0.43 +0.3
112,935 + Dsui_0114 0.43 -0.7
112,941 + +0.3
112,949 - Dsui_0114 0.44 -2.7
112,966 + +0.3
112,990 + Dsui_0114 0.47 +0.3
112,990 + +0.3
112,990 + Dsui_0114 0.47 -1.7
113,030 + Dsui_0114 0.50 -0.7
113,115 + +0.3
113,146 + +0.3
113,173 - Dsui_0114 0.60 -1.7
113,187 + Dsui_0114 0.61 +0.0
113,255 + +0.3
113,287 - Dsui_0114 0.68 -0.7

Or see this region's nucleotide sequence