Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13985

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13975 and BWI76_RS13980 are separated by 10 nucleotidesBWI76_RS13980 and BWI76_RS13985 are separated by 168 nucleotidesBWI76_RS13985 and BWI76_RS13990 overlap by 4 nucleotides BWI76_RS13975: BWI76_RS13975 - urea carboxylase, at 2,916,748 to 2,917,476 _RS13975 BWI76_RS13980: BWI76_RS13980 - hypothetical protein, at 2,917,487 to 2,918,122 _RS13980 BWI76_RS13985: BWI76_RS13985 - urea carboxylase, at 2,918,291 to 2,921,896 _RS13985 BWI76_RS13990: BWI76_RS13990 - allophanate hydrolase, at 2,921,893 to 2,923,689 _RS13990 Position (kb) 2918 2919 2920 2921 2922Strain fitness (log2 ratio) -1 0 1at 2917.396 kb on + strand, within BWI76_RS13975at 2917.845 kb on - strand, within BWI76_RS13980at 2917.850 kb on + strand, within BWI76_RS13980at 2918.124 kb on - strandat 2918.187 kb on - strandat 2918.342 kb on + strandat 2918.404 kb on - strandat 2918.506 kb on - strandat 2918.564 kb on + strandat 2918.955 kb on + strand, within BWI76_RS13985at 2919.073 kb on + strand, within BWI76_RS13985at 2919.189 kb on - strand, within BWI76_RS13985at 2919.196 kb on + strandat 2919.204 kb on - strand, within BWI76_RS13985at 2919.204 kb on - strand, within BWI76_RS13985at 2919.566 kb on - strand, within BWI76_RS13985at 2919.621 kb on + strand, within BWI76_RS13985at 2919.831 kb on - strand, within BWI76_RS13985at 2920.177 kb on + strand, within BWI76_RS13985at 2920.336 kb on - strand, within BWI76_RS13985at 2920.510 kb on + strand, within BWI76_RS13985at 2920.547 kb on + strand, within BWI76_RS13985at 2920.780 kb on + strand, within BWI76_RS13985at 2920.966 kb on + strand, within BWI76_RS13985at 2921.164 kb on + strand, within BWI76_RS13985at 2921.563 kb on - strandat 2921.704 kb on + strandat 2922.522 kb on - strand, within BWI76_RS13990at 2922.585 kb on + strand, within BWI76_RS13990

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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2,917,396 + BWI76_RS13975 0.89 +0.4
2,917,845 - BWI76_RS13980 0.56 +0.0
2,917,850 + BWI76_RS13980 0.57 +0.5
2,918,124 - +0.2
2,918,187 - +0.2
2,918,342 + -0.1
2,918,404 - +0.2
2,918,506 - -0.1
2,918,564 + +0.2
2,918,955 + BWI76_RS13985 0.18 -0.2
2,919,073 + BWI76_RS13985 0.22 +0.7
2,919,189 - BWI76_RS13985 0.25 -0.2
2,919,196 + -1.4
2,919,204 - BWI76_RS13985 0.25 -0.4
2,919,204 - BWI76_RS13985 0.25 -0.2
2,919,566 - BWI76_RS13985 0.35 +0.3
2,919,621 + BWI76_RS13985 0.37 -0.5
2,919,831 - BWI76_RS13985 0.43 +0.6
2,920,177 + BWI76_RS13985 0.52 -0.3
2,920,336 - BWI76_RS13985 0.57 -0.3
2,920,510 + BWI76_RS13985 0.62 +1.4
2,920,547 + BWI76_RS13985 0.63 +0.4
2,920,780 + BWI76_RS13985 0.69 -0.1
2,920,966 + BWI76_RS13985 0.74 -0.1
2,921,164 + BWI76_RS13985 0.80 -0.6
2,921,563 - -0.3
2,921,704 + -0.0
2,922,522 - BWI76_RS13990 0.35 +0.1
2,922,585 + BWI76_RS13990 0.39 +0.3

Or see this region's nucleotide sequence