Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16625

Experiment: reconstituted MRS with Sialyllacto-N-tetraose c 5.0 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Sialyllacto-N-tetraose c 5.0 mM
1,497,527	+		BBR_RS16615	0.83	+0.8
1,497,535	-		BBR_RS16615	0.84	-0.3
1,497,555	-		BBR_RS16615	0.85	+0.5
1,497,584	+		BBR_RS16615	0.88	+0.2
1,497,584	+		BBR_RS16615	0.88	-1.4
1,497,621	+				+0.9
1,497,629	-				-0.4
1,497,681	-				-0.3
1,497,692	-				-0.8
1,497,697	+				-0.5
1,497,746	-				+0.9
1,497,903	+		BBR_RS16620	0.23	+0.1
1,497,911	-		BBR_RS16620	0.24	+0.3
1,497,925	-		BBR_RS16620	0.25	-0.5
1,497,959	+		BBR_RS16620	0.30	-0.8
1,498,012	-		BBR_RS16620	0.37	-0.8
1,498,012	-		BBR_RS16620	0.37	-0.5
1,498,041	-		BBR_RS16620	0.40	-0.1
1,498,116	-		BBR_RS16620	0.50	+0.8
1,498,193	-		BBR_RS16620	0.60	+0.9
1,498,221	-		BBR_RS16620	0.63	-0.2
1,498,240	-		BBR_RS16620	0.66	+0.3
1,498,267	+		BBR_RS16620	0.69	-0.0
1,498,388	-		BBR_RS16620	0.85	-0.1
1,498,483	-				+1.0
1,498,513	+				+0.2
1,498,596	+				-0.1
1,498,646	-		BBR_RS16625	0.15	+0.1
1,498,727	-		BBR_RS16625	0.24	+0.3
1,498,773	+		BBR_RS16625	0.30	+0.8
1,498,818	-		BBR_RS16625	0.35	+0.2
1,498,947	-		BBR_RS16625	0.50	+1.0
1,498,958	+		BBR_RS16625	0.52	+0.3
1,498,966	-		BBR_RS16625	0.53	-0.5
1,498,966	-		BBR_RS16625	0.53	+0.5
1,498,983	-		BBR_RS16625	0.55	-0.1
1,498,995	-		BBR_RS16625	0.56	-0.2
1,499,068	-		BBR_RS16625	0.65	-1.2
1,499,087	+		BBR_RS16625	0.67	-1.0
1,499,119	+		BBR_RS16625	0.71	-0.9
1,499,187	-		BBR_RS16625	0.79	+0.0
1,499,215	-		BBR_RS16625	0.82	+1.0
1,499,259	+		BBR_RS16625	0.87	+2.9
1,499,267	-		BBR_RS16625	0.88	-0.6
1,499,267	-		BBR_RS16625	0.88	-1.0
1,499,395	-				+0.6
1,499,423	-				+0.0
1,499,500	+				+0.7
1,499,517	-				+0.1
1,499,548	-				+1.0
1,499,601	-		BBR_RS16630	0.13	-0.1
1,499,610	+		BBR_RS16630	0.14	-0.9
1,499,610	+		BBR_RS16630	0.14	+0.0
1,499,610	+		BBR_RS16630	0.14	-0.9
1,499,610	+		BBR_RS16630	0.14	+0.7
1,499,610	+		BBR_RS16630	0.14	+0.3
1,499,618	-		BBR_RS16630	0.15	+0.2
1,499,782	+		BBR_RS16630	0.34	+0.1
1,499,782	+		BBR_RS16630	0.34	-1.2
1,499,901	-		BBR_RS16630	0.48	-0.7
1,499,948	-		BBR_RS16630	0.53	+0.2
1,500,140	-		BBR_RS16630	0.75	-0.2
1,500,185	-		BBR_RS16630	0.81	-0.0
1,500,199	+		BBR_RS16630	0.82	+0.5
1,500,254	+		BBR_RS16630	0.89	+0.0
1,500,254	+		BBR_RS16630	0.89	+0.1
1,500,295	-				-0.9