Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1993

Experiment: L-Threonine as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1992 and DvMF_1993 overlap by 16 nucleotidesDvMF_1993 and DvMF_1994 are separated by 310 nucleotides DvMF_1992: DvMF_1992 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,468,570 to 2,469,688 _1992 DvMF_1993: DvMF_1993 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,469,673 to 2,471,133 _1993 DvMF_1994: DvMF_1994 - transcriptional regulator, GntR family (RefSeq), at 2,471,444 to 2,472,175 _1994 Position (kb) 2469 2470 2471 2472Strain fitness (log2 ratio) -1 0 1at 2468.864 kb on - strand, within DvMF_1992at 2468.990 kb on - strand, within DvMF_1992at 2469.056 kb on - strand, within DvMF_1992at 2469.220 kb on - strand, within DvMF_1992at 2469.225 kb on + strand, within DvMF_1992at 2469.306 kb on - strand, within DvMF_1992at 2469.333 kb on + strand, within DvMF_1992at 2469.449 kb on - strand, within DvMF_1992at 2469.521 kb on - strand, within DvMF_1992at 2469.663 kb on + strandat 2470.006 kb on - strand, within DvMF_1993at 2470.378 kb on - strand, within DvMF_1993at 2470.380 kb on + strand, within DvMF_1993at 2470.494 kb on + strand, within DvMF_1993at 2471.192 kb on - strandat 2471.203 kb on + strandat 2471.351 kb on + strandat 2471.359 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
remove
2,468,864 - DvMF_1992 0.26 +0.4
2,468,990 - DvMF_1992 0.38 -0.5
2,469,056 - DvMF_1992 0.43 -0.8
2,469,220 - DvMF_1992 0.58 +0.1
2,469,225 + DvMF_1992 0.59 -0.3
2,469,306 - DvMF_1992 0.66 -1.0
2,469,333 + DvMF_1992 0.68 -1.7
2,469,449 - DvMF_1992 0.79 +1.0
2,469,521 - DvMF_1992 0.85 -0.3
2,469,663 + +0.1
2,470,006 - DvMF_1993 0.23 +0.9
2,470,378 - DvMF_1993 0.48 -0.5
2,470,380 + DvMF_1993 0.48 -0.2
2,470,494 + DvMF_1993 0.56 -0.2
2,471,192 - +0.4
2,471,203 + +0.3
2,471,351 + +0.3
2,471,359 - +0.2

Or see this region's nucleotide sequence