Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0896

Experiment: L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0895 and DvMF_0896 are separated by 371 nucleotidesDvMF_0896 and DvMF_0897 are separated by 165 nucleotides DvMF_0895: DvMF_0895 - hypothetical protein (RefSeq), at 1,078,544 to 1,079,413 _0895 DvMF_0896: DvMF_0896 - hypothetical protein (RefSeq), at 1,079,785 to 1,080,477 _0896 DvMF_0897: DvMF_0897 - apurinic endonuclease Apn1 (RefSeq), at 1,080,643 to 1,081,545 _0897 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -2 -1 0 1at 1078.790 kb on - strand, within DvMF_0895at 1078.828 kb on - strand, within DvMF_0895at 1078.976 kb on - strand, within DvMF_0895at 1079.027 kb on - strand, within DvMF_0895at 1079.075 kb on + strand, within DvMF_0895at 1079.642 kb on + strandat 1079.725 kb on + strandat 1080.459 kb on + strandat 1080.464 kb on + strandat 1080.471 kb on + strandat 1080.595 kb on + strandat 1080.745 kb on - strand, within DvMF_0897at 1080.884 kb on - strand, within DvMF_0897at 1080.976 kb on + strand, within DvMF_0897at 1081.209 kb on - strand, within DvMF_0897

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
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1,078,790 - DvMF_0895 0.28 -0.2
1,078,828 - DvMF_0895 0.33 -0.5
1,078,976 - DvMF_0895 0.50 +0.3
1,079,027 - DvMF_0895 0.56 -0.3
1,079,075 + DvMF_0895 0.61 -2.0
1,079,642 + +0.0
1,079,725 + +1.1
1,080,459 + -0.0
1,080,464 + +0.1
1,080,471 + +0.3
1,080,595 + +0.5
1,080,745 - DvMF_0897 0.11 +0.7
1,080,884 - DvMF_0897 0.27 +1.0
1,080,976 + DvMF_0897 0.37 -0.3
1,081,209 - DvMF_0897 0.63 +0.2

Or see this region's nucleotide sequence