Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0808

Experiment: L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0807 and DvMF_0808 are separated by 221 nucleotidesDvMF_0808 and DvMF_0809 are separated by 449 nucleotides DvMF_0807: DvMF_0807 - Bile acid:sodium symporter (RefSeq), at 972,878 to 973,951 _0807 DvMF_0808: DvMF_0808 - transcriptional regulator, AraC family (RefSeq), at 974,173 to 974,967 _0808 DvMF_0809: DvMF_0809 - glycerol kinase (RefSeq), at 975,417 to 976,910 _0809 Position (kb) 974 975Strain fitness (log2 ratio) -1 0 1 2 3at 973.539 kb on - strand, within DvMF_0807at 973.602 kb on + strand, within DvMF_0807at 973.621 kb on + strand, within DvMF_0807at 973.942 kb on + strandat 974.029 kb on - strandat 974.093 kb on - strandat 974.211 kb on + strandat 974.428 kb on + strand, within DvMF_0808at 974.446 kb on + strand, within DvMF_0808at 974.557 kb on - strand, within DvMF_0808at 974.675 kb on - strand, within DvMF_0808at 974.739 kb on - strand, within DvMF_0808at 974.779 kb on - strand, within DvMF_0808at 974.951 kb on - strandat 975.441 kb on - strandat 975.483 kb on + strandat 975.614 kb on + strand, within DvMF_0809at 975.696 kb on + strand, within DvMF_0809at 975.790 kb on + strand, within DvMF_0809at 975.824 kb on + strand, within DvMF_0809at 975.824 kb on + strand, within DvMF_0809at 975.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
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973,539 - DvMF_0807 0.62 +0.3
973,602 + DvMF_0807 0.67 +3.3
973,621 + DvMF_0807 0.69 +0.3
973,942 + +0.9
974,029 - +0.1
974,093 - +0.5
974,211 + +0.1
974,428 + DvMF_0808 0.32 -0.2
974,446 + DvMF_0808 0.34 -0.0
974,557 - DvMF_0808 0.48 +0.6
974,675 - DvMF_0808 0.63 +0.2
974,739 - DvMF_0808 0.71 +0.3
974,779 - DvMF_0808 0.76 -0.0
974,951 - -0.1
975,441 - +0.6
975,483 + -0.2
975,614 + DvMF_0809 0.13 -0.7
975,696 + DvMF_0809 0.19 +0.5
975,790 + DvMF_0809 0.25 +0.3
975,824 + DvMF_0809 0.27 +0.1
975,824 + DvMF_0809 0.27 -0.6
975,832 - -0.2

Or see this region's nucleotide sequence