Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0793

Experiment: L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0792 and DvMF_0793 are separated by 49 nucleotidesDvMF_0793 and DvMF_0794 are separated by 502 nucleotides DvMF_0792: DvMF_0792 - CheW protein (RefSeq), at 955,548 to 956,042 _0792 DvMF_0793: DvMF_0793 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 956,092 to 957,840 _0793 DvMF_0794: DvMF_0794 - transcriptional regulator, XRE family (RefSeq), at 958,343 to 958,648 _0794 Position (kb) 956 957 958Strain fitness (log2 ratio) -1 0 1at 955.156 kb on + strandat 955.372 kb on - strandat 955.382 kb on - strandat 955.405 kb on - strandat 955.970 kb on + strand, within DvMF_0792at 956.012 kb on - strandat 956.212 kb on - strandat 956.212 kb on - strandat 956.626 kb on + strand, within DvMF_0793at 956.731 kb on - strand, within DvMF_0793at 956.899 kb on + strand, within DvMF_0793at 956.906 kb on + strand, within DvMF_0793at 957.023 kb on - strand, within DvMF_0793at 957.111 kb on - strand, within DvMF_0793at 957.266 kb on - strand, within DvMF_0793at 957.987 kb on - strandat 958.487 kb on - strand, within DvMF_0794at 958.542 kb on - strand, within DvMF_0794at 958.686 kb on + strandat 958.694 kb on - strandat 958.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
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955,156 + +0.1
955,372 - +0.5
955,382 - +0.7
955,405 - +0.1
955,970 + DvMF_0792 0.85 +1.3
956,012 - +0.4
956,212 - +0.2
956,212 - +0.1
956,626 + DvMF_0793 0.31 +0.5
956,731 - DvMF_0793 0.37 +0.5
956,899 + DvMF_0793 0.46 +0.0
956,906 + DvMF_0793 0.47 +0.7
957,023 - DvMF_0793 0.53 +0.5
957,111 - DvMF_0793 0.58 -0.2
957,266 - DvMF_0793 0.67 -0.0
957,987 - -0.1
958,487 - DvMF_0794 0.47 +1.1
958,542 - DvMF_0794 0.65 +1.2
958,686 + +0.9
958,694 - +1.0
958,705 + +1.1

Or see this region's nucleotide sequence