Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0614

Experiment: L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0613 and DvMF_0614 overlap by 10 nucleotidesDvMF_0614 and DvMF_0615 are separated by 195 nucleotides DvMF_0613: DvMF_0613 - nicotinate (nicotinamide) nucleotide adenylyltransferase (RefSeq), at 726,751 to 727,605 _0613 DvMF_0614: DvMF_0614 - Tetratricopeptide domain protein (RefSeq), at 727,596 to 728,411 _0614 DvMF_0615: DvMF_0615 - glycosyl transferase family 9 (RefSeq), at 728,607 to 729,773 _0615 Position (kb) 727 728 729Strain fitness (log2 ratio) -1 0 1at 727.515 kb on - strand, within DvMF_0613at 727.648 kb on - strandat 727.857 kb on - strand, within DvMF_0614at 727.944 kb on + strand, within DvMF_0614at 728.065 kb on + strand, within DvMF_0614at 728.290 kb on - strand, within DvMF_0614

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
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727,515 - DvMF_0613 0.89 -0.6
727,648 - +0.1
727,857 - DvMF_0614 0.32 +0.6
727,944 + DvMF_0614 0.43 +1.5
728,065 + DvMF_0614 0.57 +0.6
728,290 - DvMF_0614 0.85 +0.8

Or see this region's nucleotide sequence