Experiment: L-Threonine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0215 and DvMF_0216 are separated by 17 nucleotides DvMF_0216 and DvMF_0217 are separated by 289 nucleotides DvMF_0217 and DvMF_0218 are separated by 102 nucleotides
DvMF_0215: DvMF_0215 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 242,020 to 243,606
_0215
DvMF_0216: DvMF_0216 - hypothetical protein (RefSeq), at 243,624 to 244,205
_0216
DvMF_0217: DvMF_0217 - Hpt protein (RefSeq), at 244,495 to 244,860
_0217
DvMF_0218: DvMF_0218 - hypothetical protein (RefSeq), at 244,963 to 245,226
_0218
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1 at 242.661 kb on + strand, within DvMF_0215 at 242.676 kb on + strand, within DvMF_0215 at 242.706 kb on + strand, within DvMF_0215 at 242.791 kb on + strand, within DvMF_0215 at 242.797 kb on - strand, within DvMF_0215 at 243.239 kb on - strand, within DvMF_0215 at 243.246 kb on - strand, within DvMF_0215 at 243.248 kb on + strand, within DvMF_0215 at 243.350 kb on - strand, within DvMF_0215 at 243.540 kb on + strand at 243.660 kb on - strand at 243.764 kb on - strand, within DvMF_0216 at 243.819 kb on + strand, within DvMF_0216 at 243.822 kb on - strand, within DvMF_0216 at 244.300 kb on - strand at 244.512 kb on - strand at 244.513 kb on - strand at 244.740 kb on + strand, within DvMF_0217 at 244.754 kb on - strand, within DvMF_0217 at 244.887 kb on + strand at 244.921 kb on + strand at 244.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine as nutrient remove 242,661 + DvMF_0215 0.40 +0.1 242,676 + DvMF_0215 0.41 +0.7 242,706 + DvMF_0215 0.43 -0.2 242,791 + DvMF_0215 0.49 +0.2 242,797 - DvMF_0215 0.49 +0.6 243,239 - DvMF_0215 0.77 +1.0 243,246 - DvMF_0215 0.77 +0.5 243,248 + DvMF_0215 0.77 +0.4 243,350 - DvMF_0215 0.84 +0.5 243,540 + +0.5 243,660 - +0.6 243,764 - DvMF_0216 0.24 +1.0 243,819 + DvMF_0216 0.34 +0.7 243,822 - DvMF_0216 0.34 +0.6 244,300 - -0.2 244,512 - +0.7 244,513 - +1.1 244,740 + DvMF_0217 0.67 +0.8 244,754 - DvMF_0217 0.71 +1.3 244,887 + +0.7 244,921 + +0.5 244,939 - +0.4
Or see this region's nucleotide sequence