Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3466

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3464 and Dshi_3465 are separated by 12 nucleotidesDshi_3465 and Dshi_3466 are separated by 33 nucleotidesDshi_3466 and Dshi_3467 are separated by 132 nucleotides Dshi_3464: Dshi_3464 - heat-inducible transcription repressor HrcA (RefSeq), at 3,644,431 to 3,645,495 _3464 Dshi_3465: Dshi_3465 - GrpE protein (RefSeq), at 3,645,508 to 3,646,101 _3465 Dshi_3466: Dshi_3466 - DNA mismatch repair protein MutS (RefSeq), at 3,646,135 to 3,648,768 _3466 Dshi_3467: Dshi_3467 - Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase (RefSeq), at 3,648,901 to 3,651,159 _3467 Position (kb) 3646 3647 3648 3649Strain fitness (log2 ratio) -2 -1 0 1 2at 3645.203 kb on + strand, within Dshi_3464at 3645.204 kb on + strand, within Dshi_3464at 3645.267 kb on - strand, within Dshi_3464at 3645.271 kb on - strand, within Dshi_3464at 3645.271 kb on - strand, within Dshi_3464at 3645.273 kb on + strand, within Dshi_3464at 3645.273 kb on + strand, within Dshi_3464at 3645.281 kb on - strand, within Dshi_3464at 3645.282 kb on + strand, within Dshi_3464at 3645.292 kb on - strand, within Dshi_3464at 3645.292 kb on - strand, within Dshi_3464at 3645.373 kb on + strand, within Dshi_3464at 3645.415 kb on + strandat 3645.474 kb on + strandat 3645.474 kb on + strandat 3645.474 kb on + strandat 3646.085 kb on - strandat 3646.127 kb on - strandat 3646.369 kb on + strandat 3646.415 kb on + strand, within Dshi_3466at 3646.508 kb on + strand, within Dshi_3466at 3646.529 kb on - strand, within Dshi_3466at 3646.620 kb on + strand, within Dshi_3466at 3646.672 kb on + strand, within Dshi_3466at 3646.882 kb on + strand, within Dshi_3466at 3646.908 kb on + strand, within Dshi_3466at 3646.994 kb on - strand, within Dshi_3466at 3647.056 kb on + strand, within Dshi_3466at 3647.141 kb on + strand, within Dshi_3466at 3647.226 kb on + strand, within Dshi_3466at 3647.227 kb on + strand, within Dshi_3466at 3647.234 kb on + strand, within Dshi_3466at 3647.310 kb on - strand, within Dshi_3466at 3647.363 kb on + strand, within Dshi_3466at 3647.721 kb on - strand, within Dshi_3466at 3647.741 kb on + strand, within Dshi_3466at 3647.745 kb on + strand, within Dshi_3466at 3647.862 kb on - strand, within Dshi_3466at 3647.888 kb on + strand, within Dshi_3466at 3647.903 kb on + strand, within Dshi_3466at 3647.920 kb on - strand, within Dshi_3466at 3647.996 kb on + strand, within Dshi_3466at 3648.004 kb on - strand, within Dshi_3466at 3648.008 kb on + strand, within Dshi_3466at 3648.113 kb on - strand, within Dshi_3466at 3648.121 kb on - strand, within Dshi_3466at 3648.166 kb on + strand, within Dshi_3466at 3648.229 kb on + strand, within Dshi_3466at 3648.296 kb on + strand, within Dshi_3466at 3648.297 kb on - strand, within Dshi_3466at 3648.321 kb on - strand, within Dshi_3466at 3648.409 kb on - strand, within Dshi_3466at 3648.413 kb on + strand, within Dshi_3466at 3648.430 kb on - strand, within Dshi_3466at 3648.455 kb on + strand, within Dshi_3466at 3648.772 kb on + strandat 3648.776 kb on + strandat 3648.791 kb on + strandat 3648.799 kb on - strandat 3648.824 kb on + strandat 3648.853 kb on - strandat 3648.874 kb on + strandat 3648.874 kb on + strandat 3648.882 kb on - strandat 3648.948 kb on + strandat 3648.991 kb on + strandat 3649.093 kb on + strandat 3649.132 kb on + strand, within Dshi_3467at 3649.152 kb on + strand, within Dshi_3467at 3649.167 kb on + strand, within Dshi_3467at 3649.218 kb on + strand, within Dshi_3467at 3649.295 kb on + strand, within Dshi_3467at 3649.355 kb on + strand, within Dshi_3467at 3649.398 kb on + strand, within Dshi_3467at 3649.406 kb on - strand, within Dshi_3467at 3649.406 kb on - strand, within Dshi_3467at 3649.406 kb on - strand, within Dshi_3467at 3649.413 kb on + strand, within Dshi_3467at 3649.490 kb on + strand, within Dshi_3467at 3649.524 kb on + strand, within Dshi_3467at 3649.529 kb on + strand, within Dshi_3467at 3649.532 kb on - strand, within Dshi_3467at 3649.532 kb on - strand, within Dshi_3467at 3649.542 kb on - strand, within Dshi_3467at 3649.602 kb on + strand, within Dshi_3467at 3649.637 kb on + strand, within Dshi_3467at 3649.652 kb on + strand, within Dshi_3467at 3649.654 kb on + strand, within Dshi_3467at 3649.764 kb on + strand, within Dshi_3467at 3649.764 kb on + strand, within Dshi_3467

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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3,645,203 + Dshi_3464 0.72 -1.9
3,645,204 + Dshi_3464 0.73 +0.5
3,645,267 - Dshi_3464 0.78 -0.4
3,645,271 - Dshi_3464 0.79 -1.2
3,645,271 - Dshi_3464 0.79 +0.7
3,645,273 + Dshi_3464 0.79 +1.4
3,645,273 + Dshi_3464 0.79 -0.3
3,645,281 - Dshi_3464 0.80 -0.1
3,645,282 + Dshi_3464 0.80 -0.1
3,645,292 - Dshi_3464 0.81 +1.0
3,645,292 - Dshi_3464 0.81 -0.1
3,645,373 + Dshi_3464 0.88 -0.0
3,645,415 + -1.3
3,645,474 + -0.1
3,645,474 + -0.6
3,645,474 + +0.3
3,646,085 - -0.7
3,646,127 - -0.0
3,646,369 + -0.6
3,646,415 + Dshi_3466 0.11 -0.9
3,646,508 + Dshi_3466 0.14 -0.4
3,646,529 - Dshi_3466 0.15 -0.3
3,646,620 + Dshi_3466 0.18 +0.1
3,646,672 + Dshi_3466 0.20 -0.6
3,646,882 + Dshi_3466 0.28 -0.1
3,646,908 + Dshi_3466 0.29 +1.0
3,646,994 - Dshi_3466 0.33 +0.4
3,647,056 + Dshi_3466 0.35 -1.3
3,647,141 + Dshi_3466 0.38 -0.8
3,647,226 + Dshi_3466 0.41 +0.6
3,647,227 + Dshi_3466 0.41 -0.1
3,647,234 + Dshi_3466 0.42 -1.2
3,647,310 - Dshi_3466 0.45 +0.1
3,647,363 + Dshi_3466 0.47 -0.2
3,647,721 - Dshi_3466 0.60 -1.3
3,647,741 + Dshi_3466 0.61 -1.0
3,647,745 + Dshi_3466 0.61 -0.2
3,647,862 - Dshi_3466 0.66 -0.6
3,647,888 + Dshi_3466 0.67 +1.3
3,647,903 + Dshi_3466 0.67 +1.0
3,647,920 - Dshi_3466 0.68 +0.8
3,647,996 + Dshi_3466 0.71 -0.2
3,648,004 - Dshi_3466 0.71 +0.5
3,648,008 + Dshi_3466 0.71 -0.7
3,648,113 - Dshi_3466 0.75 -0.2
3,648,121 - Dshi_3466 0.75 -0.4
3,648,166 + Dshi_3466 0.77 +1.5
3,648,229 + Dshi_3466 0.79 -0.3
3,648,296 + Dshi_3466 0.82 -1.0
3,648,297 - Dshi_3466 0.82 -1.0
3,648,321 - Dshi_3466 0.83 -0.0
3,648,409 - Dshi_3466 0.86 +0.5
3,648,413 + Dshi_3466 0.86 -0.1
3,648,430 - Dshi_3466 0.87 +0.1
3,648,455 + Dshi_3466 0.88 +0.3
3,648,772 + -0.2
3,648,776 + +0.3
3,648,791 + +0.4
3,648,799 - +0.5
3,648,824 + +0.5
3,648,853 - -0.3
3,648,874 + +0.8
3,648,874 + +0.4
3,648,882 - -0.4
3,648,948 + +0.7
3,648,991 + +1.1
3,649,093 + -0.0
3,649,132 + Dshi_3467 0.10 -0.4
3,649,152 + Dshi_3467 0.11 -0.2
3,649,167 + Dshi_3467 0.12 +2.0
3,649,218 + Dshi_3467 0.14 +1.3
3,649,295 + Dshi_3467 0.17 -0.6
3,649,355 + Dshi_3467 0.20 +0.4
3,649,398 + Dshi_3467 0.22 -0.9
3,649,406 - Dshi_3467 0.22 -0.1
3,649,406 - Dshi_3467 0.22 +0.1
3,649,406 - Dshi_3467 0.22 -0.6
3,649,413 + Dshi_3467 0.23 +0.1
3,649,490 + Dshi_3467 0.26 -0.0
3,649,524 + Dshi_3467 0.28 +0.1
3,649,529 + Dshi_3467 0.28 -0.3
3,649,532 - Dshi_3467 0.28 -0.0
3,649,532 - Dshi_3467 0.28 -0.6
3,649,542 - Dshi_3467 0.28 +0.5
3,649,602 + Dshi_3467 0.31 -0.2
3,649,637 + Dshi_3467 0.33 -0.6
3,649,652 + Dshi_3467 0.33 +1.0
3,649,654 + Dshi_3467 0.33 +0.6
3,649,764 + Dshi_3467 0.38 -0.0
3,649,764 + Dshi_3467 0.38 -0.8

Or see this region's nucleotide sequence