Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1158

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1157 and Dshi_1158 are separated by 49 nucleotidesDshi_1158 and Dshi_1159 are separated by 444 nucleotidesDshi_1159 and Dshi_1160 are separated by 4 nucleotides Dshi_1157: Dshi_1157 - protein of unknown function UPF0061 (RefSeq), at 1,182,730 to 1,184,175 _1157 Dshi_1158: Dshi_1158 - Inosine/uridine-preferring nucleoside hydrolase (RefSeq), at 1,184,225 to 1,185,181 _1158 Dshi_1159: Dshi_1159 - hypothetical protein (RefSeq), at 1,185,626 to 1,186,144 _1159 Dshi_1160: Dshi_1160 - MazG family protein (RefSeq), at 1,186,149 to 1,186,988 _1160 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -1 0 1 2at 1183.246 kb on + strand, within Dshi_1157at 1183.246 kb on + strand, within Dshi_1157at 1183.254 kb on - strand, within Dshi_1157at 1183.280 kb on + strand, within Dshi_1157at 1183.364 kb on + strand, within Dshi_1157at 1183.543 kb on - strand, within Dshi_1157at 1183.550 kb on - strand, within Dshi_1157at 1183.748 kb on - strand, within Dshi_1157at 1183.790 kb on - strand, within Dshi_1157at 1183.954 kb on + strand, within Dshi_1157at 1183.962 kb on - strand, within Dshi_1157at 1184.095 kb on + strandat 1184.223 kb on + strandat 1184.223 kb on + strandat 1184.325 kb on - strand, within Dshi_1158at 1184.399 kb on - strand, within Dshi_1158at 1184.438 kb on + strand, within Dshi_1158at 1184.650 kb on + strand, within Dshi_1158at 1184.782 kb on + strand, within Dshi_1158at 1184.815 kb on + strand, within Dshi_1158at 1184.876 kb on - strand, within Dshi_1158at 1184.887 kb on + strand, within Dshi_1158at 1184.990 kb on + strand, within Dshi_1158at 1185.163 kb on + strandat 1185.163 kb on + strandat 1185.238 kb on - strandat 1185.513 kb on + strandat 1185.521 kb on - strandat 1185.911 kb on - strand, within Dshi_1159at 1185.990 kb on + strand, within Dshi_1159at 1185.990 kb on + strand, within Dshi_1159at 1185.998 kb on - strand, within Dshi_1159at 1186.065 kb on + strand, within Dshi_1159at 1186.098 kb on - strandat 1186.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,183,246 + Dshi_1157 0.36 -0.7
1,183,246 + Dshi_1157 0.36 +1.1
1,183,254 - Dshi_1157 0.36 +0.3
1,183,280 + Dshi_1157 0.38 +0.1
1,183,364 + Dshi_1157 0.44 +0.0
1,183,543 - Dshi_1157 0.56 -1.1
1,183,550 - Dshi_1157 0.57 -0.3
1,183,748 - Dshi_1157 0.70 +0.0
1,183,790 - Dshi_1157 0.73 -0.4
1,183,954 + Dshi_1157 0.85 -1.0
1,183,962 - Dshi_1157 0.85 +0.0
1,184,095 + +0.4
1,184,223 + +0.0
1,184,223 + -0.4
1,184,325 - Dshi_1158 0.10 +0.1
1,184,399 - Dshi_1158 0.18 -0.7
1,184,438 + Dshi_1158 0.22 +0.1
1,184,650 + Dshi_1158 0.44 -0.6
1,184,782 + Dshi_1158 0.58 -0.9
1,184,815 + Dshi_1158 0.62 -0.5
1,184,876 - Dshi_1158 0.68 -0.5
1,184,887 + Dshi_1158 0.69 -1.3
1,184,990 + Dshi_1158 0.80 -0.1
1,185,163 + -0.6
1,185,163 + -0.2
1,185,238 - +1.1
1,185,513 + -0.4
1,185,521 - -0.4
1,185,911 - Dshi_1159 0.55 -0.8
1,185,990 + Dshi_1159 0.70 -0.6
1,185,990 + Dshi_1159 0.70 -0.5
1,185,998 - Dshi_1159 0.72 -0.4
1,186,065 + Dshi_1159 0.85 +2.3
1,186,098 - +0.1
1,186,103 - -0.4

Or see this region's nucleotide sequence