Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0371 and Dshi_0372 are separated by 100 nucleotides Dshi_0372 and Dshi_0373 are separated by 144 nucleotides Dshi_0373 and Dshi_0374 are separated by 58 nucleotides Dshi_0374 and Dshi_0375 overlap by 4 nucleotides
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Dshi_0372: Dshi_0372 - hypothetical protein (RefSeq), at 355,405 to 355,728
_0372
Dshi_0373: Dshi_0373 - Long-chain-fatty-acid--CoA ligase (RefSeq), at 355,873 to 357,843
_0373
Dshi_0374: Dshi_0374 - hypothetical protein (RefSeq), at 357,902 to 358,156
_0374
Dshi_0375: Dshi_0375 - ABC transporter related (RefSeq), at 358,153 to 358,974
_0375
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -1
0
1 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371 at 355.010 kb on + strand, within Dshi_0371 at 355.022 kb on + strand, within Dshi_0371 at 355.199 kb on + strand, within Dshi_0371 at 355.265 kb on + strand at 355.459 kb on + strand, within Dshi_0372 at 355.535 kb on - strand, within Dshi_0372 at 355.575 kb on + strand, within Dshi_0372 at 355.623 kb on + strand, within Dshi_0372 at 355.693 kb on - strand, within Dshi_0372 at 355.697 kb on - strand at 355.912 kb on + strand at 355.960 kb on - strand at 355.990 kb on + strand at 355.997 kb on - strand at 355.998 kb on - strand at 356.066 kb on - strand at 356.066 kb on - strand at 356.109 kb on - strand, within Dshi_0373 at 356.125 kb on + strand, within Dshi_0373 at 356.200 kb on - strand, within Dshi_0373 at 356.214 kb on + strand, within Dshi_0373 at 356.287 kb on - strand, within Dshi_0373 at 356.292 kb on + strand, within Dshi_0373 at 356.297 kb on + strand, within Dshi_0373 at 356.448 kb on + strand, within Dshi_0373 at 356.456 kb on - strand, within Dshi_0373 at 356.483 kb on - strand, within Dshi_0373 at 356.488 kb on + strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.571 kb on - strand, within Dshi_0373 at 356.619 kb on + strand, within Dshi_0373 at 356.635 kb on - strand, within Dshi_0373 at 356.637 kb on - strand, within Dshi_0373 at 356.680 kb on - strand, within Dshi_0373 at 356.706 kb on - strand, within Dshi_0373 at 356.723 kb on - strand, within Dshi_0373 at 356.734 kb on + strand, within Dshi_0373 at 356.747 kb on - strand, within Dshi_0373 at 356.800 kb on + strand, within Dshi_0373 at 356.806 kb on + strand, within Dshi_0373 at 356.808 kb on - strand, within Dshi_0373 at 356.873 kb on + strand, within Dshi_0373 at 356.881 kb on - strand, within Dshi_0373 at 356.918 kb on + strand, within Dshi_0373 at 356.929 kb on + strand, within Dshi_0373 at 357.016 kb on - strand, within Dshi_0373 at 357.018 kb on + strand, within Dshi_0373 at 357.018 kb on + strand, within Dshi_0373 at 357.057 kb on + strand, within Dshi_0373 at 357.073 kb on + strand, within Dshi_0373 at 357.073 kb on - strand, within Dshi_0373 at 357.114 kb on + strand, within Dshi_0373 at 357.152 kb on + strand, within Dshi_0373 at 357.152 kb on + strand, within Dshi_0373 at 357.160 kb on - strand, within Dshi_0373 at 357.219 kb on - strand, within Dshi_0373 at 357.260 kb on + strand, within Dshi_0373 at 357.285 kb on + strand, within Dshi_0373 at 357.292 kb on + strand, within Dshi_0373 at 357.293 kb on - strand, within Dshi_0373 at 357.533 kb on + strand, within Dshi_0373 at 357.645 kb on + strand, within Dshi_0373 at 357.647 kb on + strand at 357.647 kb on + strand at 357.766 kb on + strand at 357.766 kb on + strand at 357.853 kb on + strand at 357.866 kb on - strand at 357.967 kb on + strand, within Dshi_0374 at 358.281 kb on - strand, within Dshi_0375 at 358.415 kb on - strand, within Dshi_0375 at 358.437 kb on + strand, within Dshi_0375 at 358.500 kb on + strand, within Dshi_0375 at 358.538 kb on + strand, within Dshi_0375 at 358.538 kb on + strand, within Dshi_0375 at 358.690 kb on - strand, within Dshi_0375 at 358.695 kb on - strand, within Dshi_0375 at 358.721 kb on - strand, within Dshi_0375 at 358.836 kb on + strand, within Dshi_0375
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 354,926 + Dshi_0371 0.48 +0.6 354,940 - Dshi_0371 0.50 +0.6 355,010 + Dshi_0371 0.60 +0.2 355,022 + Dshi_0371 0.61 -0.3 355,199 + Dshi_0371 0.86 -0.4 355,265 + -0.1 355,459 + Dshi_0372 0.17 +0.2 355,535 - Dshi_0372 0.40 +0.0 355,575 + Dshi_0372 0.52 -0.6 355,623 + Dshi_0372 0.67 -0.3 355,693 - Dshi_0372 0.89 -0.3 355,697 - -0.3 355,912 + +0.3 355,960 - +0.3 355,990 + +0.8 355,997 - -0.5 355,998 - +0.2 356,066 - -0.2 356,066 - -0.5 356,109 - Dshi_0373 0.12 +0.7 356,125 + Dshi_0373 0.13 -0.0 356,200 - Dshi_0373 0.17 +0.3 356,214 + Dshi_0373 0.17 +0.3 356,287 - Dshi_0373 0.21 +0.1 356,292 + Dshi_0373 0.21 +0.2 356,297 + Dshi_0373 0.22 -1.1 356,448 + Dshi_0373 0.29 -0.9 356,456 - Dshi_0373 0.30 -0.1 356,483 - Dshi_0373 0.31 -0.4 356,488 + Dshi_0373 0.31 -0.8 356,491 - Dshi_0373 0.31 -0.0 356,491 - Dshi_0373 0.31 -0.9 356,571 - Dshi_0373 0.35 -0.2 356,619 + Dshi_0373 0.38 -0.2 356,635 - Dshi_0373 0.39 -0.3 356,637 - Dshi_0373 0.39 -1.1 356,680 - Dshi_0373 0.41 -0.4 356,706 - Dshi_0373 0.42 +0.1 356,723 - Dshi_0373 0.43 +0.1 356,734 + Dshi_0373 0.44 +0.2 356,747 - Dshi_0373 0.44 -0.3 356,800 + Dshi_0373 0.47 -0.0 356,806 + Dshi_0373 0.47 -0.6 356,808 - Dshi_0373 0.47 -0.2 356,873 + Dshi_0373 0.51 -0.3 356,881 - Dshi_0373 0.51 -0.6 356,918 + Dshi_0373 0.53 +0.2 356,929 + Dshi_0373 0.54 +0.2 357,016 - Dshi_0373 0.58 +0.1 357,018 + Dshi_0373 0.58 +0.5 357,018 + Dshi_0373 0.58 -0.4 357,057 + Dshi_0373 0.60 -0.4 357,073 + Dshi_0373 0.61 +0.3 357,073 - Dshi_0373 0.61 -0.6 357,114 + Dshi_0373 0.63 +0.3 357,152 + Dshi_0373 0.65 -0.6 357,152 + Dshi_0373 0.65 -0.7 357,160 - Dshi_0373 0.65 -0.3 357,219 - Dshi_0373 0.68 +0.0 357,260 + Dshi_0373 0.70 -0.1 357,285 + Dshi_0373 0.72 +0.0 357,292 + Dshi_0373 0.72 -0.8 357,293 - Dshi_0373 0.72 +0.3 357,533 + Dshi_0373 0.84 -0.4 357,645 + Dshi_0373 0.90 -0.9 357,647 + -0.3 357,647 + +0.3 357,766 + +0.3 357,766 + -0.2 357,853 + -0.4 357,866 - +0.4 357,967 + Dshi_0374 0.25 -0.7 358,281 - Dshi_0375 0.16 +0.2 358,415 - Dshi_0375 0.32 -1.4 358,437 + Dshi_0375 0.35 -0.7 358,500 + Dshi_0375 0.42 +0.2 358,538 + Dshi_0375 0.47 -1.3 358,538 + Dshi_0375 0.47 -0.0 358,690 - Dshi_0375 0.65 -0.8 358,695 - Dshi_0375 0.66 -0.1 358,721 - Dshi_0375 0.69 +0.6 358,836 + Dshi_0375 0.83 -0.1
Or see this region's nucleotide sequence