Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4164

Experiment: phosphite 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4162 and Pf6N2E2_4163 are separated by 74 nucleotidesPf6N2E2_4163 and Pf6N2E2_4164 are separated by 59 nucleotidesPf6N2E2_4164 and Pf6N2E2_4165 are separated by 165 nucleotides Pf6N2E2_4162 - DNA polymerase I (EC 2.7.7.7), at 4,843,318 to 4,846,086 _4162 Pf6N2E2_4163 - FIG00953549: hypothetical protein, at 4,846,161 to 4,846,448 _4163 Pf6N2E2_4164 - Homoserine kinase (EC 2.7.1.39), at 4,846,508 to 4,847,458 _4164 Pf6N2E2_4165 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 4,847,624 to 4,848,553 _4165 Position (kb) 4846 4847 4848Strain fitness (log2 ratio) -1 0 1 2 3 4at 4846.121 kb on - strandat 4846.157 kb on + strandat 4846.157 kb on + strandat 4846.158 kb on - strandat 4846.166 kb on + strandat 4846.166 kb on + strandat 4846.166 kb on + strandat 4846.166 kb on + strandat 4846.167 kb on - strandat 4846.167 kb on - strandat 4846.171 kb on + strandat 4846.171 kb on + strandat 4846.171 kb on + strandat 4846.172 kb on - strandat 4846.280 kb on + strand, within Pf6N2E2_4163at 4846.318 kb on - strand, within Pf6N2E2_4163at 4846.353 kb on + strand, within Pf6N2E2_4163at 4846.353 kb on + strand, within Pf6N2E2_4163at 4846.353 kb on + strand, within Pf6N2E2_4163at 4846.353 kb on + strand, within Pf6N2E2_4163at 4846.353 kb on + strand, within Pf6N2E2_4163at 4846.435 kb on + strandat 4846.435 kb on + strandat 4846.446 kb on + strandat 4846.446 kb on + strandat 4846.446 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.456 kb on + strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.457 kb on - strandat 4847.460 kb on + strandat 4847.460 kb on + strandat 4847.460 kb on + strandat 4847.460 kb on + strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.461 kb on - strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.627 kb on + strandat 4847.628 kb on - strandat 4847.628 kb on - strandat 4847.628 kb on - strandat 4847.628 kb on - strandat 4847.682 kb on + strandat 4847.706 kb on + strandat 4847.706 kb on + strandat 4847.706 kb on + strandat 4847.706 kb on + strandat 4847.707 kb on - strandat 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.907 kb on + strand, within Pf6N2E2_4165at 4847.908 kb on - strand, within Pf6N2E2_4165at 4847.908 kb on - strand, within Pf6N2E2_4165at 4847.908 kb on - strand, within Pf6N2E2_4165at 4847.923 kb on - strand, within Pf6N2E2_4165at 4847.949 kb on + strand, within Pf6N2E2_4165at 4847.950 kb on - strand, within Pf6N2E2_4165at 4847.950 kb on - strand, within Pf6N2E2_4165at 4848.322 kb on - strand, within Pf6N2E2_4165at 4848.372 kb on + strand, within Pf6N2E2_4165at 4848.373 kb on - strand, within Pf6N2E2_4165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phosphite 0.25 M
remove
4,846,121 - -0.3
4,846,157 + +0.8
4,846,157 + -0.2
4,846,158 - -0.2
4,846,166 + -0.0
4,846,166 + -0.1
4,846,166 + +0.4
4,846,166 + +0.5
4,846,167 - -0.9
4,846,167 - -1.1
4,846,171 + -1.4
4,846,171 + +0.2
4,846,171 + +0.9
4,846,172 - -0.8
4,846,280 + Pf6N2E2_4163 0.41 +0.0
4,846,318 - Pf6N2E2_4163 0.55 +0.4
4,846,353 + Pf6N2E2_4163 0.67 +0.4
4,846,353 + Pf6N2E2_4163 0.67 -0.3
4,846,353 + Pf6N2E2_4163 0.67 +0.2
4,846,353 + Pf6N2E2_4163 0.67 -0.0
4,846,353 + Pf6N2E2_4163 0.67 -0.4
4,846,435 + -0.2
4,846,435 + +0.2
4,846,446 + -0.3
4,846,446 + +0.4
4,846,446 + +0.5
4,847,456 + -0.0
4,847,456 + -1.3
4,847,456 + +0.6
4,847,456 + -1.7
4,847,456 + +1.2
4,847,456 + -0.4
4,847,456 + -0.5
4,847,456 + +1.1
4,847,456 + -0.7
4,847,456 + +0.4
4,847,457 - +1.2
4,847,457 - -0.1
4,847,457 - -0.9
4,847,457 - +0.3
4,847,457 - +0.4
4,847,457 - +0.3
4,847,457 - +0.6
4,847,460 + +0.0
4,847,460 + +0.3
4,847,460 + -0.5
4,847,460 + -1.1
4,847,461 - +0.7
4,847,461 - -0.7
4,847,461 - -0.1
4,847,461 - +1.0
4,847,461 - -0.5
4,847,461 - -1.4
4,847,627 + +0.1
4,847,627 + +0.3
4,847,627 + +0.7
4,847,627 + +0.2
4,847,627 + +0.5
4,847,628 - +0.2
4,847,628 - +0.1
4,847,628 - -0.2
4,847,628 - +1.0
4,847,682 + -0.3
4,847,706 + +0.3
4,847,706 + +1.1
4,847,706 + +0.2
4,847,706 + -0.1
4,847,707 - -1.4
4,847,907 + Pf6N2E2_4165 0.30 -0.7
4,847,907 + Pf6N2E2_4165 0.30 +0.8
4,847,907 + Pf6N2E2_4165 0.30 +0.4
4,847,907 + Pf6N2E2_4165 0.30 -0.4
4,847,907 + Pf6N2E2_4165 0.30 -0.1
4,847,907 + Pf6N2E2_4165 0.30 -0.2
4,847,907 + Pf6N2E2_4165 0.30 +0.2
4,847,908 - Pf6N2E2_4165 0.31 +0.1
4,847,908 - Pf6N2E2_4165 0.31 -0.2
4,847,908 - Pf6N2E2_4165 0.31 +0.5
4,847,923 - Pf6N2E2_4165 0.32 +0.2
4,847,949 + Pf6N2E2_4165 0.35 +1.3
4,847,950 - Pf6N2E2_4165 0.35 +0.8
4,847,950 - Pf6N2E2_4165 0.35 +0.6
4,848,322 - Pf6N2E2_4165 0.75 +4.4
4,848,372 + Pf6N2E2_4165 0.80 -0.5
4,848,373 - Pf6N2E2_4165 0.81 +0.8

Or see this region's nucleotide sequence