Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06277

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06275 and H281DRAFT_06276 are separated by 86 nucleotidesH281DRAFT_06276 and H281DRAFT_06277 are separated by 30 nucleotidesH281DRAFT_06277 and H281DRAFT_06278 are separated by 284 nucleotidesH281DRAFT_06278 and H281DRAFT_06279 are separated by 24 nucleotides H281DRAFT_06275: H281DRAFT_06275 - ribonucleoside-diphosphate reductase beta chain, at 58,432 to 59,676 _06275 H281DRAFT_06276: H281DRAFT_06276 - hypothetical protein, at 59,763 to 60,089 _06276 H281DRAFT_06277: H281DRAFT_06277 - hypothetical protein, at 60,120 to 60,764 _06277 H281DRAFT_06278: H281DRAFT_06278 - outer membrane lipoprotein SlyB, at 61,049 to 61,525 _06278 H281DRAFT_06279: H281DRAFT_06279 - adenosine kinase, at 61,550 to 62,488 _06279 Position (kb) 60 61Strain fitness (log2 ratio) -1 0 1 2 3at 59.739 kb on + strandat 59.739 kb on + strandat 59.739 kb on + strandat 59.739 kb on + strandat 59.740 kb on - strandat 59.740 kb on - strandat 59.740 kb on - strandat 59.745 kb on + strandat 59.745 kb on + strandat 59.903 kb on - strand, within H281DRAFT_06276at 59.984 kb on - strand, within H281DRAFT_06276at 60.014 kb on + strand, within H281DRAFT_06276at 60.014 kb on + strand, within H281DRAFT_06276at 60.015 kb on - strand, within H281DRAFT_06276at 60.015 kb on - strand, within H281DRAFT_06276at 60.027 kb on - strand, within H281DRAFT_06276at 60.077 kb on + strandat 60.077 kb on + strandat 60.078 kb on - strandat 60.078 kb on - strandat 60.078 kb on - strandat 60.078 kb on - strandat 60.220 kb on + strand, within H281DRAFT_06277at 60.221 kb on - strand, within H281DRAFT_06277at 60.286 kb on + strand, within H281DRAFT_06277at 60.286 kb on + strand, within H281DRAFT_06277at 60.286 kb on + strand, within H281DRAFT_06277at 60.352 kb on + strand, within H281DRAFT_06277at 60.352 kb on + strand, within H281DRAFT_06277at 60.509 kb on + strand, within H281DRAFT_06277at 60.557 kb on + strand, within H281DRAFT_06277at 60.558 kb on - strand, within H281DRAFT_06277at 60.776 kb on - strandat 60.787 kb on - strandat 60.794 kb on - strandat 60.848 kb on + strandat 60.848 kb on + strandat 60.849 kb on - strandat 60.863 kb on + strandat 61.050 kb on + strandat 61.051 kb on - strandat 61.051 kb on - strandat 61.171 kb on + strand, within H281DRAFT_06278at 61.246 kb on + strand, within H281DRAFT_06278at 61.431 kb on + strand, within H281DRAFT_06278at 61.432 kb on - strand, within H281DRAFT_06278at 61.432 kb on - strand, within H281DRAFT_06278at 61.455 kb on + strand, within H281DRAFT_06278at 61.455 kb on + strand, within H281DRAFT_06278at 61.455 kb on + strand, within H281DRAFT_06278at 61.456 kb on - strand, within H281DRAFT_06278at 61.456 kb on - strand, within H281DRAFT_06278at 61.456 kb on - strand, within H281DRAFT_06278at 61.456 kb on - strand, within H281DRAFT_06278at 61.456 kb on - strand, within H281DRAFT_06278at 61.503 kb on - strandat 61.518 kb on - strandat 61.518 kb on - strandat 61.539 kb on + strandat 61.540 kb on - strandat 61.548 kb on + strandat 61.549 kb on - strandat 61.551 kb on + strandat 61.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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59,739 + +0.4
59,739 + +1.1
59,739 + +1.2
59,739 + +0.4
59,740 - +1.6
59,740 - +1.5
59,740 - +1.7
59,745 + +0.3
59,745 + +0.9
59,903 - H281DRAFT_06276 0.43 +1.2
59,984 - H281DRAFT_06276 0.68 +1.5
60,014 + H281DRAFT_06276 0.77 +1.6
60,014 + H281DRAFT_06276 0.77 +0.7
60,015 - H281DRAFT_06276 0.77 -0.2
60,015 - H281DRAFT_06276 0.77 +2.1
60,027 - H281DRAFT_06276 0.81 +1.6
60,077 + +0.4
60,077 + +1.4
60,078 - +1.5
60,078 - +1.4
60,078 - +1.0
60,078 - +1.5
60,220 + H281DRAFT_06277 0.16 +0.1
60,221 - H281DRAFT_06277 0.16 +2.1
60,286 + H281DRAFT_06277 0.26 +1.8
60,286 + H281DRAFT_06277 0.26 +1.0
60,286 + H281DRAFT_06277 0.26 +1.5
60,352 + H281DRAFT_06277 0.36 +0.8
60,352 + H281DRAFT_06277 0.36 +0.9
60,509 + H281DRAFT_06277 0.60 +0.9
60,557 + H281DRAFT_06277 0.68 +0.9
60,558 - H281DRAFT_06277 0.68 -0.3
60,776 - +0.9
60,787 - +0.3
60,794 - +1.0
60,848 + +0.1
60,848 + +0.2
60,849 - +3.0
60,863 + +0.2
61,050 + -0.2
61,051 - -0.4
61,051 - +0.5
61,171 + H281DRAFT_06278 0.26 +0.0
61,246 + H281DRAFT_06278 0.41 -0.1
61,431 + H281DRAFT_06278 0.80 -0.1
61,432 - H281DRAFT_06278 0.80 -0.5
61,432 - H281DRAFT_06278 0.80 +0.1
61,455 + H281DRAFT_06278 0.85 +1.1
61,455 + H281DRAFT_06278 0.85 +1.5
61,455 + H281DRAFT_06278 0.85 +0.3
61,456 - H281DRAFT_06278 0.85 -0.0
61,456 - H281DRAFT_06278 0.85 -0.2
61,456 - H281DRAFT_06278 0.85 +0.0
61,456 - H281DRAFT_06278 0.85 +0.1
61,456 - H281DRAFT_06278 0.85 +0.6
61,503 - -0.0
61,518 - +0.0
61,518 - -0.5
61,539 + -1.0
61,540 - +0.5
61,548 + -0.0
61,549 - +0.2
61,551 + +0.1
61,615 - +0.2

Or see this region's nucleotide sequence