Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06253 and H281DRAFT_06254 are separated by 180 nucleotides H281DRAFT_06254 and H281DRAFT_06255 are separated by 3 nucleotides H281DRAFT_06255 and H281DRAFT_06256 are separated by 28 nucleotides
H281DRAFT_06253: H281DRAFT_06253 - cell division protein ZapD, at 34,761 to 35,516
_06253
H281DRAFT_06254: H281DRAFT_06254 - dephospho-CoA kinase, at 35,697 to 36,308
_06254
H281DRAFT_06255: H281DRAFT_06255 - leader peptidase (prepilin peptidase) / N-methyltransferase, at 36,312 to 37,265
_06255
H281DRAFT_06256: H281DRAFT_06256 - type IV pilus assembly protein PilC, at 37,294 to 38,523
_06256
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1 at 35.472 kb on + strand at 35.473 kb on - strand at 35.501 kb on - strand at 35.506 kb on + strand at 35.507 kb on - strand at 35.563 kb on + strand at 35.564 kb on - strand at 35.578 kb on - strand at 35.583 kb on - strand at 35.658 kb on + strand at 35.658 kb on + strand at 36.653 kb on - strand, within H281DRAFT_06255 at 36.901 kb on + strand, within H281DRAFT_06255 at 36.901 kb on + strand, within H281DRAFT_06255 at 36.901 kb on + strand, within H281DRAFT_06255 at 36.901 kb on + strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.902 kb on - strand, within H281DRAFT_06255 at 36.983 kb on - strand, within H281DRAFT_06255 at 36.983 kb on - strand, within H281DRAFT_06255 at 37.074 kb on - strand, within H281DRAFT_06255 at 37.074 kb on - strand, within H281DRAFT_06255 at 37.273 kb on - strand at 37.295 kb on + strand at 37.295 kb on + strand at 37.296 kb on - strand at 37.296 kb on - strand at 37.317 kb on + strand at 37.328 kb on + strand at 37.328 kb on + strand at 37.328 kb on + strand at 37.328 kb on + strand at 37.329 kb on - strand at 37.329 kb on - strand at 37.329 kb on - strand at 37.329 kb on - strand at 37.329 kb on - strand at 37.732 kb on + strand, within H281DRAFT_06256 at 37.745 kb on - strand, within H281DRAFT_06256 at 37.805 kb on + strand, within H281DRAFT_06256 at 37.806 kb on - strand, within H281DRAFT_06256 at 37.806 kb on - strand, within H281DRAFT_06256 at 37.867 kb on + strand, within H281DRAFT_06256 at 37.867 kb on + strand, within H281DRAFT_06256 at 37.868 kb on - strand, within H281DRAFT_06256 at 37.870 kb on + strand, within H281DRAFT_06256 at 37.870 kb on + strand, within H281DRAFT_06256 at 37.870 kb on + strand, within H281DRAFT_06256 at 37.984 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.994 kb on + strand, within H281DRAFT_06256 at 37.995 kb on - strand, within H281DRAFT_06256 at 37.995 kb on - strand, within H281DRAFT_06256 at 37.995 kb on - strand, within H281DRAFT_06256 at 37.995 kb on - strand, within H281DRAFT_06256 at 37.995 kb on - strand, within H281DRAFT_06256 at 38.063 kb on - strand, within H281DRAFT_06256 at 38.063 kb on - strand, within H281DRAFT_06256 at 38.114 kb on + strand, within H281DRAFT_06256 at 38.114 kb on + strand, within H281DRAFT_06256 at 38.115 kb on - strand, within H281DRAFT_06256 at 38.115 kb on - strand, within H281DRAFT_06256 at 38.115 kb on - strand, within H281DRAFT_06256 at 38.115 kb on - strand, within H281DRAFT_06256 at 38.115 kb on - strand, within H281DRAFT_06256 at 38.245 kb on + strand, within H281DRAFT_06256 at 38.245 kb on + strand, within H281DRAFT_06256
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 35,472 + -0.4 35,473 - +0.9 35,501 - -0.3 35,506 + +0.7 35,507 - -0.1 35,563 + -1.2 35,564 - -1.1 35,578 - -0.3 35,583 - -0.4 35,658 + +0.0 35,658 + -0.2 36,653 - H281DRAFT_06255 0.36 +0.8 36,901 + H281DRAFT_06255 0.62 -0.0 36,901 + H281DRAFT_06255 0.62 +0.4 36,901 + H281DRAFT_06255 0.62 +0.9 36,901 + H281DRAFT_06255 0.62 +0.1 36,902 - H281DRAFT_06255 0.62 +1.4 36,902 - H281DRAFT_06255 0.62 +0.5 36,902 - H281DRAFT_06255 0.62 +0.9 36,902 - H281DRAFT_06255 0.62 +0.7 36,902 - H281DRAFT_06255 0.62 +0.8 36,902 - H281DRAFT_06255 0.62 +0.9 36,902 - H281DRAFT_06255 0.62 +0.0 36,983 - H281DRAFT_06255 0.70 +0.3 36,983 - H281DRAFT_06255 0.70 -0.1 37,074 - H281DRAFT_06255 0.80 +0.8 37,074 - H281DRAFT_06255 0.80 +1.4 37,273 - +0.5 37,295 + -0.4 37,295 + +0.4 37,296 - +0.2 37,296 - -0.7 37,317 + +0.3 37,328 + -1.6 37,328 + +1.0 37,328 + -0.8 37,328 + -1.3 37,329 - -0.5 37,329 - -0.6 37,329 - +0.5 37,329 - +1.4 37,329 - +0.2 37,732 + H281DRAFT_06256 0.36 +0.1 37,745 - H281DRAFT_06256 0.37 +1.1 37,805 + H281DRAFT_06256 0.42 +0.4 37,806 - H281DRAFT_06256 0.42 -0.0 37,806 - H281DRAFT_06256 0.42 -0.3 37,867 + H281DRAFT_06256 0.47 -0.7 37,867 + H281DRAFT_06256 0.47 +0.1 37,868 - H281DRAFT_06256 0.47 -0.1 37,870 + H281DRAFT_06256 0.47 +0.4 37,870 + H281DRAFT_06256 0.47 -0.3 37,870 + H281DRAFT_06256 0.47 +0.7 37,984 + H281DRAFT_06256 0.56 -0.2 37,994 + H281DRAFT_06256 0.57 -0.5 37,994 + H281DRAFT_06256 0.57 +1.7 37,994 + H281DRAFT_06256 0.57 +0.2 37,994 + H281DRAFT_06256 0.57 -0.2 37,994 + H281DRAFT_06256 0.57 -0.2 37,994 + H281DRAFT_06256 0.57 +0.5 37,994 + H281DRAFT_06256 0.57 +0.8 37,995 - H281DRAFT_06256 0.57 +0.6 37,995 - H281DRAFT_06256 0.57 +0.1 37,995 - H281DRAFT_06256 0.57 +0.1 37,995 - H281DRAFT_06256 0.57 -0.4 37,995 - H281DRAFT_06256 0.57 -0.9 38,063 - H281DRAFT_06256 0.63 +0.3 38,063 - H281DRAFT_06256 0.63 -1.1 38,114 + H281DRAFT_06256 0.67 -0.5 38,114 + H281DRAFT_06256 0.67 -0.5 38,115 - H281DRAFT_06256 0.67 +0.1 38,115 - H281DRAFT_06256 0.67 -0.3 38,115 - H281DRAFT_06256 0.67 +0.5 38,115 - H281DRAFT_06256 0.67 -0.1 38,115 - H281DRAFT_06256 0.67 +0.6 38,245 + H281DRAFT_06256 0.77 +1.7 38,245 + H281DRAFT_06256 0.77 -1.3
Or see this region's nucleotide sequence