Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06093 and H281DRAFT_06094 are separated by 383 nucleotides H281DRAFT_06094 and H281DRAFT_06095 are separated by 389 nucleotides
H281DRAFT_06093: H281DRAFT_06093 - hypothetical protein, at 111,224 to 111,901
_06093
H281DRAFT_06094: H281DRAFT_06094 - transcriptional regulator, GntR family, at 112,285 to 113,688
_06094
H281DRAFT_06095: H281DRAFT_06095 - D-amino-acid dehydrogenase, at 114,078 to 115,313
_06095
Position (kb) 112
113
114 Strain fitness (log2 ratio) -1
0
1
2 at 111.443 kb on + strand, within H281DRAFT_06093 at 111.444 kb on - strand, within H281DRAFT_06093 at 111.647 kb on + strand, within H281DRAFT_06093 at 111.647 kb on + strand, within H281DRAFT_06093 at 111.648 kb on - strand, within H281DRAFT_06093 at 111.780 kb on - strand, within H281DRAFT_06093 at 111.888 kb on - strand at 112.013 kb on - strand at 112.044 kb on + strand at 112.045 kb on - strand at 112.076 kb on + strand at 112.077 kb on - strand at 112.077 kb on - strand at 112.235 kb on - strand at 112.237 kb on + strand at 112.238 kb on - strand at 112.241 kb on + strand at 112.390 kb on - strand at 112.390 kb on - strand at 112.544 kb on - strand, within H281DRAFT_06094 at 112.788 kb on + strand, within H281DRAFT_06094 at 112.853 kb on + strand, within H281DRAFT_06094 at 112.853 kb on + strand, within H281DRAFT_06094 at 112.853 kb on + strand, within H281DRAFT_06094 at 112.854 kb on - strand, within H281DRAFT_06094 at 112.854 kb on - strand, within H281DRAFT_06094 at 112.855 kb on + strand, within H281DRAFT_06094 at 112.855 kb on + strand, within H281DRAFT_06094 at 112.855 kb on + strand, within H281DRAFT_06094 at 112.855 kb on + strand, within H281DRAFT_06094 at 112.855 kb on + strand, within H281DRAFT_06094 at 112.856 kb on - strand, within H281DRAFT_06094 at 112.856 kb on - strand, within H281DRAFT_06094 at 112.856 kb on - strand, within H281DRAFT_06094 at 113.091 kb on - strand, within H281DRAFT_06094 at 113.093 kb on + strand, within H281DRAFT_06094 at 113.093 kb on + strand, within H281DRAFT_06094 at 113.093 kb on + strand, within H281DRAFT_06094 at 113.094 kb on - strand, within H281DRAFT_06094 at 113.153 kb on + strand, within H281DRAFT_06094 at 113.153 kb on + strand at 113.154 kb on - strand at 113.205 kb on + strand, within H281DRAFT_06094 at 113.435 kb on - strand, within H281DRAFT_06094 at 113.437 kb on + strand, within H281DRAFT_06094 at 113.493 kb on - strand, within H281DRAFT_06094 at 113.621 kb on + strand at 113.622 kb on - strand at 113.771 kb on + strand at 113.989 kb on + strand at 113.990 kb on - strand at 114.037 kb on - strand at 114.076 kb on + strand at 114.077 kb on - strand at 114.492 kb on + strand, within H281DRAFT_06095 at 114.493 kb on - strand, within H281DRAFT_06095 at 114.544 kb on + strand, within H281DRAFT_06095
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 111,443 + H281DRAFT_06093 0.32 +0.1 111,444 - H281DRAFT_06093 0.32 +0.3 111,647 + H281DRAFT_06093 0.62 -0.1 111,647 + H281DRAFT_06093 0.62 +0.1 111,648 - H281DRAFT_06093 0.63 -0.0 111,780 - H281DRAFT_06093 0.82 +0.2 111,888 - +0.3 112,013 - +0.7 112,044 + +1.0 112,045 - -0.1 112,076 + -0.5 112,077 - +1.8 112,077 - -0.2 112,235 - +0.1 112,237 + +0.5 112,238 - -0.4 112,241 + -1.4 112,390 - +1.0 112,390 - +0.6 112,544 - H281DRAFT_06094 0.18 +0.7 112,788 + H281DRAFT_06094 0.36 +1.6 112,853 + H281DRAFT_06094 0.40 +0.6 112,853 + H281DRAFT_06094 0.40 +0.9 112,853 + H281DRAFT_06094 0.40 +0.9 112,854 - H281DRAFT_06094 0.41 +0.7 112,854 - H281DRAFT_06094 0.41 +1.2 112,855 + H281DRAFT_06094 0.41 -0.4 112,855 + H281DRAFT_06094 0.41 +1.1 112,855 + H281DRAFT_06094 0.41 +1.1 112,855 + H281DRAFT_06094 0.41 +1.1 112,855 + H281DRAFT_06094 0.41 +1.0 112,856 - H281DRAFT_06094 0.41 +0.9 112,856 - H281DRAFT_06094 0.41 +0.6 112,856 - H281DRAFT_06094 0.41 +0.6 113,091 - H281DRAFT_06094 0.57 +0.8 113,093 + H281DRAFT_06094 0.58 +1.2 113,093 + H281DRAFT_06094 0.58 +1.1 113,093 + H281DRAFT_06094 0.58 +1.7 113,094 - H281DRAFT_06094 0.58 +2.1 113,153 + H281DRAFT_06094 0.62 +1.0 113,153 + +1.3 113,154 - -0.9 113,205 + H281DRAFT_06094 0.66 +0.7 113,435 - H281DRAFT_06094 0.82 +0.9 113,437 + H281DRAFT_06094 0.82 +0.8 113,493 - H281DRAFT_06094 0.86 +2.0 113,621 + +0.5 113,622 - +0.6 113,771 + +0.8 113,989 + +0.7 113,990 - -0.2 114,037 - -0.1 114,076 + +1.1 114,077 - -0.9 114,492 + H281DRAFT_06095 0.33 -0.3 114,493 - H281DRAFT_06095 0.34 -0.3 114,544 + H281DRAFT_06095 0.38 -0.5
Or see this region's nucleotide sequence