Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05953

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05952 and H281DRAFT_05953 are separated by 150 nucleotidesH281DRAFT_05953 and H281DRAFT_05954 are separated by 2 nucleotides H281DRAFT_05952: H281DRAFT_05952 - transcriptional regulator, LysR family, at 92,141 to 93,082 _05952 H281DRAFT_05953: H281DRAFT_05953 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 93,233 to 94,165 _05953 H281DRAFT_05954: H281DRAFT_05954 - Sugar phosphate permease, at 94,168 to 95,490 _05954 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1at 92.717 kb on + strand, within H281DRAFT_05952at 92.717 kb on + strand, within H281DRAFT_05952at 92.812 kb on + strand, within H281DRAFT_05952at 93.256 kb on + strandat 93.574 kb on + strand, within H281DRAFT_05953at 93.658 kb on + strand, within H281DRAFT_05953at 93.877 kb on - strand, within H281DRAFT_05953at 94.003 kb on - strand, within H281DRAFT_05953at 94.314 kb on - strand, within H281DRAFT_05954at 94.390 kb on - strand, within H281DRAFT_05954at 94.541 kb on - strand, within H281DRAFT_05954at 94.541 kb on - strand, within H281DRAFT_05954at 94.590 kb on - strand, within H281DRAFT_05954at 94.748 kb on + strand, within H281DRAFT_05954at 95.150 kb on + strand, within H281DRAFT_05954

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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92,717 + H281DRAFT_05952 0.61 +0.4
92,717 + H281DRAFT_05952 0.61 -0.0
92,812 + H281DRAFT_05952 0.71 -0.1
93,256 + +0.1
93,574 + H281DRAFT_05953 0.37 +1.5
93,658 + H281DRAFT_05953 0.46 +0.8
93,877 - H281DRAFT_05953 0.69 -0.5
94,003 - H281DRAFT_05953 0.83 -0.9
94,314 - H281DRAFT_05954 0.11 -0.3
94,390 - H281DRAFT_05954 0.17 +0.5
94,541 - H281DRAFT_05954 0.28 +0.5
94,541 - H281DRAFT_05954 0.28 +0.2
94,590 - H281DRAFT_05954 0.32 +0.6
94,748 + H281DRAFT_05954 0.44 +0.4
95,150 + H281DRAFT_05954 0.74 +0.1

Or see this region's nucleotide sequence