Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05755

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05754 and H281DRAFT_05755 overlap by 8 nucleotidesH281DRAFT_05755 and H281DRAFT_05756 are separated by 28 nucleotidesH281DRAFT_05756 and H281DRAFT_05757 are separated by 72 nucleotides H281DRAFT_05754: H281DRAFT_05754 - flagellar biosynthesis protein FlhF, at 28,590 to 30,743 _05754 H281DRAFT_05755: H281DRAFT_05755 - flagellar biosynthesis protein FlhG, at 30,736 to 31,605 _05755 H281DRAFT_05756: H281DRAFT_05756 - RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG, at 31,634 to 32,368 _05756 H281DRAFT_05757: H281DRAFT_05757 - Predicted nuclease of the RNAse H fold, HicB family, at 32,441 to 32,851 _05757 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1 2at 30.309 kb on - strand, within H281DRAFT_05754at 30.537 kb on + strandat 30.555 kb on + strandat 30.556 kb on - strandat 30.591 kb on + strandat 30.591 kb on + strandat 30.592 kb on - strandat 30.592 kb on - strandat 30.688 kb on + strandat 30.688 kb on + strandat 30.689 kb on - strandat 30.689 kb on - strandat 30.841 kb on - strand, within H281DRAFT_05755at 30.841 kb on - strandat 31.229 kb on - strand, within H281DRAFT_05755at 31.637 kb on + strandat 31.637 kb on + strandat 31.639 kb on + strandat 31.682 kb on + strandat 31.683 kb on - strandat 32.061 kb on - strand, within H281DRAFT_05756at 32.225 kb on + strand, within H281DRAFT_05756at 32.387 kb on + strandat 32.588 kb on - strand, within H281DRAFT_05757

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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30,309 - H281DRAFT_05754 0.80 -1.5
30,537 + +0.3
30,555 + -0.0
30,556 - +0.1
30,591 + +0.4
30,591 + +0.2
30,592 - -0.3
30,592 - -0.5
30,688 + +0.7
30,688 + +0.2
30,689 - -0.1
30,689 - +0.2
30,841 - H281DRAFT_05755 0.12 +0.9
30,841 - +2.5
31,229 - H281DRAFT_05755 0.57 +0.7
31,637 + +0.5
31,637 + -0.0
31,639 + +0.2
31,682 + +0.5
31,683 - +0.7
32,061 - H281DRAFT_05756 0.58 +0.2
32,225 + H281DRAFT_05756 0.80 +0.7
32,387 + +0.9
32,588 - H281DRAFT_05757 0.36 -0.3

Or see this region's nucleotide sequence