Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05071

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05069 and H281DRAFT_05070 are separated by 146 nucleotidesH281DRAFT_05070 and H281DRAFT_05071 are separated by 178 nucleotidesH281DRAFT_05071 and H281DRAFT_05072 are separated by 403 nucleotides H281DRAFT_05069: H281DRAFT_05069 - Sporulation protein YlmC, PRC-barrel domain family, at 8,474 to 8,947 _05069 H281DRAFT_05070: H281DRAFT_05070 - camphor resistance protein CrcB, at 9,094 to 9,528 _05070 H281DRAFT_05071: H281DRAFT_05071 - ammonium transporter, at 9,707 to 10,909 _05071 H281DRAFT_05072: H281DRAFT_05072 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 11,313 to 12,995 _05072 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1at 8.754 kb on + strand, within H281DRAFT_05069at 9.091 kb on + strandat 9.095 kb on + strandat 9.096 kb on - strandat 9.160 kb on + strand, within H281DRAFT_05070at 9.160 kb on + strand, within H281DRAFT_05070at 9.471 kb on - strand, within H281DRAFT_05070at 9.644 kb on + strandat 9.645 kb on - strandat 9.771 kb on + strandat 9.771 kb on + strandat 9.990 kb on - strand, within H281DRAFT_05071at 10.721 kb on - strand, within H281DRAFT_05071at 10.972 kb on + strandat 10.973 kb on - strandat 11.078 kb on + strandat 11.078 kb on + strandat 11.078 kb on + strandat 11.078 kb on + strandat 11.079 kb on - strandat 11.079 kb on - strandat 11.079 kb on - strandat 11.079 kb on - strandat 11.080 kb on + strandat 11.080 kb on + strandat 11.080 kb on + strandat 11.080 kb on + strandat 11.080 kb on + strandat 11.080 kb on + strandat 11.081 kb on - strandat 11.081 kb on - strandat 11.081 kb on - strandat 11.081 kb on - strandat 11.081 kb on - strandat 11.081 kb on - strandat 11.088 kb on + strandat 11.262 kb on + strandat 11.262 kb on + strandat 11.262 kb on + strandat 11.262 kb on + strandat 11.262 kb on + strandat 11.263 kb on - strandat 11.263 kb on - strandat 11.263 kb on - strandat 11.322 kb on - strandat 11.576 kb on - strand, within H281DRAFT_05072at 11.864 kb on - strand, within H281DRAFT_05072

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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8,754 + H281DRAFT_05069 0.59 +0.0
9,091 + +0.5
9,095 + -0.1
9,096 - -1.8
9,160 + H281DRAFT_05070 0.15 +0.3
9,160 + H281DRAFT_05070 0.15 +0.0
9,471 - H281DRAFT_05070 0.87 +0.3
9,644 + +0.4
9,645 - +0.3
9,771 + -0.2
9,771 + -0.6
9,990 - H281DRAFT_05071 0.24 +1.4
10,721 - H281DRAFT_05071 0.84 +0.3
10,972 + +0.2
10,973 - +0.7
11,078 + -0.5
11,078 + -0.2
11,078 + -1.2
11,078 + +0.4
11,079 - -0.4
11,079 - -0.1
11,079 - -0.5
11,079 - -0.0
11,080 + +0.3
11,080 + +0.2
11,080 + +0.0
11,080 + -1.3
11,080 + +0.6
11,080 + +0.4
11,081 - -0.8
11,081 - -0.4
11,081 - -0.3
11,081 - +0.3
11,081 - -0.2
11,081 - +0.4
11,088 + +0.1
11,262 + +0.3
11,262 + +0.0
11,262 + -0.2
11,262 + -0.3
11,262 + +0.8
11,263 - +0.1
11,263 - -1.4
11,263 - -1.1
11,322 - -1.0
11,576 - H281DRAFT_05072 0.16 -0.2
11,864 - H281DRAFT_05072 0.33 +1.1

Or see this region's nucleotide sequence