Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05058

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05057 and H281DRAFT_05058 are separated by 444 nucleotidesH281DRAFT_05058 and H281DRAFT_05059 are separated by 137 nucleotides H281DRAFT_05057: H281DRAFT_05057 - DNA-binding transcriptional regulator, LysR family, at 248,296 to 249,195 _05057 H281DRAFT_05058: H281DRAFT_05058 - Predicted secreted hydrolase, at 249,640 to 249,840 _05058 H281DRAFT_05059: H281DRAFT_05059 - 5S rRNA. Bacterial TSU, at 249,978 to 250,077 _05059 Position (kb) 249 250Strain fitness (log2 ratio) -1 0 1at 248.855 kb on + strand, within H281DRAFT_05057at 248.855 kb on + strand, within H281DRAFT_05057at 248.856 kb on - strand, within H281DRAFT_05057at 248.963 kb on + strand, within H281DRAFT_05057at 248.977 kb on - strand, within H281DRAFT_05057at 249.035 kb on - strand, within H281DRAFT_05057at 249.035 kb on - strand, within H281DRAFT_05057at 249.107 kb on + strandat 249.108 kb on - strandat 249.108 kb on - strandat 249.116 kb on - strandat 249.194 kb on - strandat 249.194 kb on - strandat 249.322 kb on + strandat 249.322 kb on + strandat 249.323 kb on - strandat 249.340 kb on - strandat 249.406 kb on + strandat 249.407 kb on - strandat 249.407 kb on - strandat 249.547 kb on + strandat 249.549 kb on + strandat 249.549 kb on + strandat 249.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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248,855 + H281DRAFT_05057 0.62 +0.0
248,855 + H281DRAFT_05057 0.62 +0.4
248,856 - H281DRAFT_05057 0.62 +1.6
248,963 + H281DRAFT_05057 0.74 -1.0
248,977 - H281DRAFT_05057 0.76 +0.3
249,035 - H281DRAFT_05057 0.82 -0.2
249,035 - H281DRAFT_05057 0.82 +0.4
249,107 + -0.1
249,108 - -0.3
249,108 - +0.8
249,116 - -0.6
249,194 - +1.6
249,194 - +0.0
249,322 + -0.1
249,322 + +0.2
249,323 - -0.4
249,340 - +0.6
249,406 + +0.2
249,407 - -0.3
249,407 - -0.4
249,547 + +0.4
249,549 + -0.4
249,549 + -0.3
249,550 - +0.1

Or see this region's nucleotide sequence