Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04716

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04714 and H281DRAFT_04715 are separated by 176 nucleotidesH281DRAFT_04715 and H281DRAFT_04716 are separated by 272 nucleotidesH281DRAFT_04716 and H281DRAFT_04717 are separated by 201 nucleotidesH281DRAFT_04717 and H281DRAFT_04718 are separated by 19 nucleotides H281DRAFT_04714: H281DRAFT_04714 - small conductance mechanosensitive channel, at 128,277 to 129,089 _04714 H281DRAFT_04715: H281DRAFT_04715 - hypothetical protein, at 129,266 to 129,730 _04715 H281DRAFT_04716: H281DRAFT_04716 - tRNA_Lys_TTT, at 130,003 to 130,078 _04716 H281DRAFT_04717: H281DRAFT_04717 - tol-pal system protein YbgF, at 130,280 to 131,029 _04717 H281DRAFT_04718: H281DRAFT_04718 - peptidoglycan-associated lipoprotein, at 131,049 to 131,558 _04718 Position (kb) 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1at 129.126 kb on - strandat 129.200 kb on + strandat 129.201 kb on - strandat 129.202 kb on + strandat 129.202 kb on + strandat 129.202 kb on + strandat 129.203 kb on - strandat 129.268 kb on - strandat 129.396 kb on + strand, within H281DRAFT_04715at 129.397 kb on - strand, within H281DRAFT_04715at 129.565 kb on + strand, within H281DRAFT_04715at 129.640 kb on + strand, within H281DRAFT_04715at 129.741 kb on + strandat 129.741 kb on + strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.912 kb on + strandat 129.913 kb on - strandat 129.913 kb on - strandat 129.913 kb on - strandat 129.921 kb on - strandat 129.970 kb on - strandat 130.144 kb on + strandat 130.144 kb on + strandat 130.144 kb on + strandat 130.145 kb on - strandat 130.145 kb on - strandat 130.145 kb on - strandat 130.281 kb on + strandat 130.282 kb on - strandat 130.282 kb on - strandat 130.489 kb on - strand, within H281DRAFT_04717at 130.503 kb on + strand, within H281DRAFT_04717at 130.524 kb on + strand, within H281DRAFT_04717at 130.558 kb on - strand, within H281DRAFT_04717at 130.731 kb on + strand, within H281DRAFT_04717at 130.735 kb on - strand, within H281DRAFT_04717at 131.050 kb on + strandat 131.051 kb on - strandat 131.051 kb on - strandat 131.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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129,126 - -1.1
129,200 + -0.4
129,201 - +0.0
129,202 + +0.0
129,202 + +1.2
129,202 + -0.0
129,203 - +0.1
129,268 - -0.9
129,396 + H281DRAFT_04715 0.28 -0.1
129,397 - H281DRAFT_04715 0.28 -0.2
129,565 + H281DRAFT_04715 0.64 -0.9
129,640 + H281DRAFT_04715 0.80 -1.2
129,741 + +0.5
129,741 + -0.4
129,742 - +0.5
129,742 - +1.0
129,742 - +0.3
129,742 - +0.3
129,742 - +0.1
129,742 - +0.9
129,742 - +0.2
129,912 + +0.2
129,913 - +0.7
129,913 - +0.6
129,913 - -0.6
129,921 - -0.5
129,970 - -0.3
130,144 + +0.4
130,144 + +0.2
130,144 + -0.5
130,145 - -1.8
130,145 - +0.4
130,145 - -0.7
130,281 + +0.4
130,282 - -1.2
130,282 - +1.2
130,489 - H281DRAFT_04717 0.28 +0.1
130,503 + H281DRAFT_04717 0.30 +0.6
130,524 + H281DRAFT_04717 0.33 -1.0
130,558 - H281DRAFT_04717 0.37 +0.6
130,731 + H281DRAFT_04717 0.60 -2.8
130,735 - H281DRAFT_04717 0.61 -2.5
131,050 + -3.1
131,051 - +0.7
131,051 - +0.1
131,051 - +0.9

Or see this region's nucleotide sequence