Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04679 and H281DRAFT_04680 are separated by 144 nucleotides H281DRAFT_04680 and H281DRAFT_04681 are separated by 37 nucleotides H281DRAFT_04681 and H281DRAFT_04682 are separated by 7 nucleotides
H281DRAFT_04679: H281DRAFT_04679 - pyrroline-5-carboxylate reductase, at 82,715 to 83,530
_04679
H281DRAFT_04680: H281DRAFT_04680 - hypothetical protein, at 83,675 to 84,373
_04680
H281DRAFT_04681: H281DRAFT_04681 - glycolate oxidase iron-sulfur subunit, at 84,411 to 85,637
_04681
H281DRAFT_04682: H281DRAFT_04682 - glycolate oxidase FAD binding subunit, at 85,645 to 86,733
_04682
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1
2 at 83.557 kb on + strand at 83.557 kb on + strand at 83.558 kb on - strand at 83.558 kb on - strand at 83.572 kb on - strand at 83.686 kb on - strand at 83.782 kb on + strand, within H281DRAFT_04680 at 84.202 kb on - strand, within H281DRAFT_04680 at 84.488 kb on + strand at 84.489 kb on - strand at 84.593 kb on - strand, within H281DRAFT_04681 at 84.869 kb on - strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 84.934 kb on + strand, within H281DRAFT_04681 at 85.409 kb on + strand, within H281DRAFT_04681 at 85.410 kb on - strand, within H281DRAFT_04681 at 85.439 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand, within H281DRAFT_04681 at 85.480 kb on + strand at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand, within H281DRAFT_04681 at 85.481 kb on - strand, within H281DRAFT_04681 at 85.525 kb on + strand at 85.525 kb on + strand at 85.525 kb on + strand at 85.526 kb on - strand at 85.769 kb on + strand, within H281DRAFT_04682 at 85.770 kb on - strand, within H281DRAFT_04682 at 85.885 kb on + strand, within H281DRAFT_04682 at 85.885 kb on + strand, within H281DRAFT_04682 at 86.163 kb on + strand, within H281DRAFT_04682 at 86.164 kb on - strand, within H281DRAFT_04682 at 86.372 kb on - strand, within H281DRAFT_04682 at 86.372 kb on - strand at 86.372 kb on - strand, within H281DRAFT_04682 at 86.374 kb on + strand, within H281DRAFT_04682 at 86.375 kb on - strand, within H281DRAFT_04682 at 86.375 kb on - strand, within H281DRAFT_04682 at 86.570 kb on + strand, within H281DRAFT_04682 at 86.630 kb on + strand at 86.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 83,557 + -0.4 83,557 + -0.3 83,558 - +0.3 83,558 - -0.5 83,572 - +0.2 83,686 - -0.6 83,782 + H281DRAFT_04680 0.15 -0.0 84,202 - H281DRAFT_04680 0.75 +0.3 84,488 + +0.1 84,489 - +0.7 84,593 - H281DRAFT_04681 0.15 +0.4 84,869 - H281DRAFT_04681 0.37 +0.7 84,934 + H281DRAFT_04681 0.43 +0.6 84,934 + H281DRAFT_04681 0.43 +0.8 84,934 + H281DRAFT_04681 0.43 +1.1 84,934 + H281DRAFT_04681 0.43 +0.3 84,934 + H281DRAFT_04681 0.43 +1.0 85,409 + H281DRAFT_04681 0.81 +0.8 85,410 - H281DRAFT_04681 0.81 +0.4 85,439 + H281DRAFT_04681 0.84 +0.4 85,480 + H281DRAFT_04681 0.87 +0.9 85,480 + H281DRAFT_04681 0.87 +1.3 85,480 + H281DRAFT_04681 0.87 +0.5 85,480 + +1.5 85,481 - H281DRAFT_04681 0.87 +0.1 85,481 - H281DRAFT_04681 0.87 +1.0 85,481 - -0.0 85,481 - H281DRAFT_04681 0.87 -1.2 85,481 - H281DRAFT_04681 0.87 +0.7 85,481 - H281DRAFT_04681 0.87 +0.6 85,525 + +0.5 85,525 + -1.2 85,525 + +0.9 85,526 - +0.6 85,769 + H281DRAFT_04682 0.11 +1.1 85,770 - H281DRAFT_04682 0.11 +0.3 85,885 + H281DRAFT_04682 0.22 +0.9 85,885 + H281DRAFT_04682 0.22 +0.2 86,163 + H281DRAFT_04682 0.48 +0.3 86,164 - H281DRAFT_04682 0.48 +0.3 86,372 - H281DRAFT_04682 0.67 +0.8 86,372 - +2.0 86,372 - H281DRAFT_04682 0.67 +0.7 86,374 + H281DRAFT_04682 0.67 -0.5 86,375 - H281DRAFT_04682 0.67 -0.0 86,375 - H281DRAFT_04682 0.67 +1.0 86,570 + H281DRAFT_04682 0.85 +0.1 86,630 + -0.1 86,631 - +2.5
Or see this region's nucleotide sequence