Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04671

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04670 and H281DRAFT_04671 are separated by 103 nucleotidesH281DRAFT_04671 and H281DRAFT_04672 are separated by 167 nucleotides H281DRAFT_04670: H281DRAFT_04670 - tRNA-guanine transglycosylase, at 72,526 to 73,716 _04670 H281DRAFT_04671: H281DRAFT_04671 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 73,820 to 74,887 _04671 H281DRAFT_04672: H281DRAFT_04672 - ATP-dependent DNA helicase RecG, at 75,055 to 77,445 _04672 Position (kb) 73 74 75Strain fitness (log2 ratio) -1 0 1at 72.924 kb on - strand, within H281DRAFT_04670at 73.220 kb on + strand, within H281DRAFT_04670at 73.491 kb on + strand, within H281DRAFT_04670at 73.559 kb on + strand, within H281DRAFT_04670at 73.559 kb on + strand, within H281DRAFT_04670at 73.722 kb on + strandat 73.723 kb on - strandat 74.388 kb on + strand, within H281DRAFT_04671at 74.496 kb on + strand, within H281DRAFT_04671at 74.497 kb on - strand, within H281DRAFT_04671at 74.497 kb on - strand, within H281DRAFT_04671at 74.690 kb on - strand, within H281DRAFT_04671at 74.944 kb on + strandat 75.017 kb on + strandat 75.038 kb on + strandat 75.039 kb on - strandat 75.039 kb on - strandat 75.460 kb on + strand, within H281DRAFT_04672at 75.632 kb on - strand, within H281DRAFT_04672

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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72,924 - H281DRAFT_04670 0.33 -0.6
73,220 + H281DRAFT_04670 0.58 +0.8
73,491 + H281DRAFT_04670 0.81 +1.4
73,559 + H281DRAFT_04670 0.87 +0.8
73,559 + H281DRAFT_04670 0.87 -0.8
73,722 + -0.2
73,723 - -0.0
74,388 + H281DRAFT_04671 0.53 +0.3
74,496 + H281DRAFT_04671 0.63 -0.5
74,497 - H281DRAFT_04671 0.63 +0.3
74,497 - H281DRAFT_04671 0.63 +1.3
74,690 - H281DRAFT_04671 0.81 +1.6
74,944 + +0.6
75,017 + -0.5
75,038 + -0.2
75,039 - +0.0
75,039 - -0.1
75,460 + H281DRAFT_04672 0.17 +0.1
75,632 - H281DRAFT_04672 0.24 -0.7

Or see this region's nucleotide sequence