Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04270 and H281DRAFT_04271 are separated by 285 nucleotides H281DRAFT_04271 and H281DRAFT_04272 are separated by 151 nucleotides
H281DRAFT_04270: H281DRAFT_04270 - L-glutamate-binding protein /L-aspartate-binding protein, at 387,591 to 388,484
_04270
H281DRAFT_04271: H281DRAFT_04271 - glutamate dehydrogenase (NAD(P)+), at 388,770 to 390,083
_04271
H281DRAFT_04272: H281DRAFT_04272 - transcriptional regulator, LysR family, at 390,235 to 391,191
_04272
Position (kb) 388
389
390
391 Strain fitness (log2 ratio) -1
0
1
2
3 at 387.799 kb on + strand, within H281DRAFT_04270 at 387.800 kb on - strand, within H281DRAFT_04270 at 388.151 kb on + strand, within H281DRAFT_04270 at 388.206 kb on - strand, within H281DRAFT_04270 at 388.333 kb on + strand, within H281DRAFT_04270 at 388.333 kb on + strand, within H281DRAFT_04270 at 388.337 kb on - strand, within H281DRAFT_04270 at 388.376 kb on + strand, within H281DRAFT_04270 at 388.407 kb on - strand at 388.518 kb on + strand at 388.526 kb on + strand at 388.530 kb on + strand at 388.530 kb on + strand at 388.541 kb on + strand at 388.541 kb on + strand at 388.547 kb on + strand at 388.548 kb on - strand at 388.548 kb on - strand at 388.549 kb on + strand at 388.550 kb on - strand at 388.550 kb on - strand at 388.602 kb on + strand at 388.620 kb on + strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.733 kb on + strand at 388.734 kb on - strand at 388.758 kb on + strand at 388.758 kb on + strand at 388.759 kb on - strand at 388.759 kb on - strand at 390.107 kb on - strand at 390.177 kb on + strand at 390.578 kb on + strand, within H281DRAFT_04272
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 387,799 + H281DRAFT_04270 0.23 -0.4 387,800 - H281DRAFT_04270 0.23 +1.2 388,151 + H281DRAFT_04270 0.63 +1.3 388,206 - H281DRAFT_04270 0.69 +1.1 388,333 + H281DRAFT_04270 0.83 +0.7 388,333 + H281DRAFT_04270 0.83 +0.8 388,337 - H281DRAFT_04270 0.83 +1.2 388,376 + H281DRAFT_04270 0.88 +1.0 388,407 - +0.7 388,518 + +1.6 388,526 + +0.9 388,530 + +0.9 388,530 + +0.8 388,541 + -1.0 388,541 + +1.1 388,547 + +0.5 388,548 - +0.7 388,548 - +0.6 388,549 + +1.0 388,550 - -0.7 388,550 - -0.0 388,602 + +0.5 388,620 + +0.5 388,623 - -1.2 388,623 - +0.6 388,623 - -0.3 388,623 - -0.5 388,623 - -1.2 388,623 - +0.1 388,733 + +0.8 388,734 - -0.9 388,758 + +0.5 388,758 + +1.4 388,759 - +0.0 388,759 - +0.4 390,107 - -0.1 390,177 + -0.3 390,578 + H281DRAFT_04272 0.36 +2.8
Or see this region's nucleotide sequence