Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04037

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04036 and H281DRAFT_04037 are separated by 62 nucleotidesH281DRAFT_04037 and H281DRAFT_04038 are separated by 50 nucleotidesH281DRAFT_04038 and H281DRAFT_04039 are separated by 54 nucleotides H281DRAFT_04036: H281DRAFT_04036 - tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33), at 136,533 to 137,321 _04036 H281DRAFT_04037: H281DRAFT_04037 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 137,384 to 138,235 _04037 H281DRAFT_04038: H281DRAFT_04038 - Protein of unknown function (DUF1439), at 138,286 to 138,876 _04038 H281DRAFT_04039: H281DRAFT_04039 - hypothetical protein, at 138,931 to 139,251 _04039 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1at 136.519 kb on + strandat 136.519 kb on + strandat 136.519 kb on + strandat 136.519 kb on + strandat 136.520 kb on - strandat 136.520 kb on - strandat 137.152 kb on - strand, within H281DRAFT_04036at 137.152 kb on - strand, within H281DRAFT_04036at 137.214 kb on + strand, within H281DRAFT_04036at 137.232 kb on + strand, within H281DRAFT_04036at 137.319 kb on + strandat 137.320 kb on - strandat 137.386 kb on - strandat 137.410 kb on + strandat 138.321 kb on + strandat 138.322 kb on - strandat 138.322 kb on - strandat 138.336 kb on + strandat 138.348 kb on - strand, within H281DRAFT_04038at 138.351 kb on + strand, within H281DRAFT_04038at 138.352 kb on - strand, within H281DRAFT_04038at 138.352 kb on - strand, within H281DRAFT_04038at 138.388 kb on - strand, within H281DRAFT_04038at 138.388 kb on - strand, within H281DRAFT_04038at 138.389 kb on + strand, within H281DRAFT_04038at 138.390 kb on - strand, within H281DRAFT_04038at 138.409 kb on + strand, within H281DRAFT_04038at 138.409 kb on + strand, within H281DRAFT_04038at 138.410 kb on - strand, within H281DRAFT_04038at 138.453 kb on + strand, within H281DRAFT_04038at 138.453 kb on + strand, within H281DRAFT_04038at 138.454 kb on - strand, within H281DRAFT_04038at 138.455 kb on + strand, within H281DRAFT_04038at 138.455 kb on + strand, within H281DRAFT_04038at 138.455 kb on + strand, within H281DRAFT_04038at 138.455 kb on + strand, within H281DRAFT_04038at 138.456 kb on - strand, within H281DRAFT_04038at 138.676 kb on + strand, within H281DRAFT_04038at 138.676 kb on + strand, within H281DRAFT_04038at 138.677 kb on - strand, within H281DRAFT_04038at 138.749 kb on + strand, within H281DRAFT_04038at 138.750 kb on - strand, within H281DRAFT_04038at 138.876 kb on + strandat 138.876 kb on + strandat 138.876 kb on + strandat 138.877 kb on - strandat 138.877 kb on - strandat 138.923 kb on + strandat 138.924 kb on - strandat 138.924 kb on - strandat 138.933 kb on - strandat 138.933 kb on - strandat 139.161 kb on + strand, within H281DRAFT_04039

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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136,519 + -0.0
136,519 + -0.7
136,519 + -1.4
136,519 + -0.8
136,520 - -1.4
136,520 - -0.0
137,152 - H281DRAFT_04036 0.78 -0.3
137,152 - H281DRAFT_04036 0.78 -0.5
137,214 + H281DRAFT_04036 0.86 -0.3
137,232 + H281DRAFT_04036 0.89 -0.9
137,319 + -0.0
137,320 - -0.2
137,386 - -0.1
137,410 + -0.1
138,321 + -0.8
138,322 - -0.1
138,322 - +0.2
138,336 + +0.2
138,348 - H281DRAFT_04038 0.10 -0.7
138,351 + H281DRAFT_04038 0.11 +0.5
138,352 - H281DRAFT_04038 0.11 +0.3
138,352 - H281DRAFT_04038 0.11 -0.1
138,388 - H281DRAFT_04038 0.17 +0.6
138,388 - H281DRAFT_04038 0.17 -1.5
138,389 + H281DRAFT_04038 0.17 -0.5
138,390 - H281DRAFT_04038 0.18 +1.0
138,409 + H281DRAFT_04038 0.21 +0.1
138,409 + H281DRAFT_04038 0.21 +0.1
138,410 - H281DRAFT_04038 0.21 -2.0
138,453 + H281DRAFT_04038 0.28 +0.6
138,453 + H281DRAFT_04038 0.28 -0.4
138,454 - H281DRAFT_04038 0.28 -1.2
138,455 + H281DRAFT_04038 0.29 -0.1
138,455 + H281DRAFT_04038 0.29 +0.1
138,455 + H281DRAFT_04038 0.29 -0.2
138,455 + H281DRAFT_04038 0.29 +0.3
138,456 - H281DRAFT_04038 0.29 -1.5
138,676 + H281DRAFT_04038 0.66 +1.6
138,676 + H281DRAFT_04038 0.66 -0.4
138,677 - H281DRAFT_04038 0.66 -0.1
138,749 + H281DRAFT_04038 0.78 -0.4
138,750 - H281DRAFT_04038 0.79 -0.0
138,876 + -0.4
138,876 + +0.7
138,876 + +0.5
138,877 - -0.5
138,877 - -1.0
138,923 + +0.5
138,924 - -0.2
138,924 - -0.3
138,933 - +0.2
138,933 - -1.0
139,161 + H281DRAFT_04039 0.72 +0.6

Or see this region's nucleotide sequence