Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04007 and H281DRAFT_04008 are separated by 221 nucleotides H281DRAFT_04008 and H281DRAFT_04009 overlap by 8 nucleotides H281DRAFT_04009 and H281DRAFT_04010 overlap by 4 nucleotides
H281DRAFT_04007: H281DRAFT_04007 - TIGR00255 family protein, at 110,140 to 111,063
_04007
H281DRAFT_04008: H281DRAFT_04008 - RNAse PH, at 111,285 to 112,025
_04008
H281DRAFT_04009: H281DRAFT_04009 - XTP/dITP diphosphohydrolase, at 112,018 to 112,665
_04009
H281DRAFT_04010: H281DRAFT_04010 - oxygen-independent coproporphyrinogen-3 oxidase, at 112,662 to 113,891
_04010
Position (kb) 111
112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 110.382 kb on - strand, within H281DRAFT_04007 at 110.851 kb on - strand, within H281DRAFT_04007 at 110.851 kb on - strand, within H281DRAFT_04007 at 110.993 kb on - strand at 110.993 kb on - strand at 111.057 kb on - strand at 111.067 kb on - strand at 111.067 kb on - strand at 111.128 kb on - strand at 111.241 kb on - strand at 111.309 kb on - strand at 111.358 kb on - strand at 111.359 kb on + strand, within H281DRAFT_04008 at 111.513 kb on - strand, within H281DRAFT_04008 at 111.772 kb on - strand, within H281DRAFT_04008 at 111.829 kb on - strand, within H281DRAFT_04008 at 112.092 kb on + strand, within H281DRAFT_04009 at 112.092 kb on + strand, within H281DRAFT_04009 at 112.391 kb on + strand, within H281DRAFT_04009 at 112.392 kb on - strand, within H281DRAFT_04009 at 112.417 kb on + strand, within H281DRAFT_04009 at 112.420 kb on + strand, within H281DRAFT_04009 at 112.421 kb on - strand, within H281DRAFT_04009 at 112.421 kb on - strand, within H281DRAFT_04009 at 112.423 kb on + strand, within H281DRAFT_04009 at 112.423 kb on + strand, within H281DRAFT_04009 at 112.424 kb on - strand, within H281DRAFT_04009 at 112.424 kb on - strand, within H281DRAFT_04009 at 112.544 kb on - strand, within H281DRAFT_04009 at 112.544 kb on - strand, within H281DRAFT_04009 at 112.544 kb on - strand, within H281DRAFT_04009 at 112.544 kb on - strand, within H281DRAFT_04009 at 112.767 kb on + strand at 112.767 kb on + strand at 112.767 kb on + strand at 112.767 kb on + strand at 112.768 kb on - strand at 112.768 kb on - strand at 112.858 kb on - strand, within H281DRAFT_04010 at 112.922 kb on + strand, within H281DRAFT_04010 at 112.922 kb on + strand, within H281DRAFT_04010 at 112.923 kb on - strand, within H281DRAFT_04010
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 110,382 - H281DRAFT_04007 0.26 -0.2 110,851 - H281DRAFT_04007 0.77 +0.4 110,851 - H281DRAFT_04007 0.77 +0.1 110,993 - -1.0 110,993 - -0.4 111,057 - +0.4 111,067 - +0.1 111,067 - -0.7 111,128 - -0.8 111,241 - -0.2 111,309 - -1.1 111,358 - +0.6 111,359 + H281DRAFT_04008 0.10 +2.2 111,513 - H281DRAFT_04008 0.31 +0.9 111,772 - H281DRAFT_04008 0.66 +1.2 111,829 - H281DRAFT_04008 0.73 +0.7 112,092 + H281DRAFT_04009 0.11 -0.4 112,092 + H281DRAFT_04009 0.11 -0.6 112,391 + H281DRAFT_04009 0.58 -0.4 112,392 - H281DRAFT_04009 0.58 -0.2 112,417 + H281DRAFT_04009 0.62 +0.1 112,420 + H281DRAFT_04009 0.62 +1.3 112,421 - H281DRAFT_04009 0.62 +0.1 112,421 - H281DRAFT_04009 0.62 +0.5 112,423 + H281DRAFT_04009 0.62 -0.4 112,423 + H281DRAFT_04009 0.62 -1.6 112,424 - H281DRAFT_04009 0.63 +0.1 112,424 - H281DRAFT_04009 0.63 +1.0 112,544 - H281DRAFT_04009 0.81 +0.7 112,544 - H281DRAFT_04009 0.81 +0.2 112,544 - H281DRAFT_04009 0.81 -1.5 112,544 - H281DRAFT_04009 0.81 -0.1 112,767 + +0.2 112,767 + -0.1 112,767 + -0.2 112,767 + +0.0 112,768 - +0.5 112,768 - -0.6 112,858 - H281DRAFT_04010 0.16 +0.3 112,922 + H281DRAFT_04010 0.21 -2.9 112,922 + H281DRAFT_04010 0.21 -1.0 112,923 - H281DRAFT_04010 0.21 +0.5
Or see this region's nucleotide sequence