Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03869 and H281DRAFT_03870 are separated by 142 nucleotides H281DRAFT_03870 and H281DRAFT_03871 are separated by 398 nucleotides H281DRAFT_03871 and H281DRAFT_03872 are separated by 44 nucleotides H281DRAFT_03872 and H281DRAFT_03873 are separated by 127 nucleotides
H281DRAFT_03869: H281DRAFT_03869 - hypothetical protein, at 398,053 to 398,502
_03869
H281DRAFT_03870: H281DRAFT_03870 - hypothetical protein, at 398,645 to 398,878
_03870
H281DRAFT_03871: H281DRAFT_03871 - hypothetical protein, at 399,277 to 400,998
_03871
H281DRAFT_03872: H281DRAFT_03872 - hypothetical protein, at 401,043 to 401,423
_03872
H281DRAFT_03873: H281DRAFT_03873 - protein of unknown function (DUF4148), at 401,551 to 401,844
_03873
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.296 kb on + strand, within H281DRAFT_03869 at 398.314 kb on - strand, within H281DRAFT_03869 at 398.382 kb on + strand, within H281DRAFT_03869 at 398.402 kb on + strand, within H281DRAFT_03869 at 398.403 kb on - strand, within H281DRAFT_03869 at 398.590 kb on - strand at 398.612 kb on + strand at 398.612 kb on + strand at 398.613 kb on - strand at 398.809 kb on + strand, within H281DRAFT_03870 at 398.809 kb on + strand, within H281DRAFT_03870 at 398.809 kb on + strand, within H281DRAFT_03870 at 398.809 kb on + strand, within H281DRAFT_03870 at 398.810 kb on - strand, within H281DRAFT_03870 at 398.916 kb on - strand at 398.916 kb on - strand at 398.916 kb on - strand at 399.221 kb on + strand at 399.276 kb on + strand at 399.292 kb on + strand at 399.293 kb on - strand at 399.403 kb on - strand at 399.512 kb on - strand, within H281DRAFT_03871 at 399.541 kb on + strand, within H281DRAFT_03871 at 399.541 kb on + strand, within H281DRAFT_03871 at 399.688 kb on + strand, within H281DRAFT_03871 at 399.852 kb on + strand, within H281DRAFT_03871 at 400.049 kb on - strand, within H281DRAFT_03871 at 400.090 kb on + strand, within H281DRAFT_03871 at 400.148 kb on - strand, within H281DRAFT_03871 at 400.148 kb on - strand, within H281DRAFT_03871 at 400.344 kb on + strand, within H281DRAFT_03871 at 400.345 kb on - strand, within H281DRAFT_03871 at 400.382 kb on - strand, within H281DRAFT_03871 at 400.525 kb on + strand, within H281DRAFT_03871 at 400.525 kb on + strand, within H281DRAFT_03871 at 400.525 kb on + strand, within H281DRAFT_03871 at 400.633 kb on + strand, within H281DRAFT_03871 at 400.648 kb on + strand, within H281DRAFT_03871 at 400.648 kb on + strand, within H281DRAFT_03871 at 400.868 kb on - strand at 400.868 kb on - strand at 400.951 kb on + strand at 400.951 kb on + strand at 400.951 kb on + strand at 400.951 kb on + strand at 400.952 kb on - strand at 400.999 kb on + strand at 401.000 kb on - strand at 401.319 kb on + strand, within H281DRAFT_03872 at 401.319 kb on + strand, within H281DRAFT_03872 at 401.320 kb on - strand, within H281DRAFT_03872 at 401.323 kb on + strand, within H281DRAFT_03872 at 401.324 kb on - strand, within H281DRAFT_03872 at 401.452 kb on + strand at 401.481 kb on + strand at 401.482 kb on - strand at 401.616 kb on + strand, within H281DRAFT_03873 at 401.712 kb on - strand, within H281DRAFT_03873 at 401.949 kb on - strand at 401.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 398,296 + H281DRAFT_03869 0.54 -0.3 398,314 - H281DRAFT_03869 0.58 -0.9 398,382 + H281DRAFT_03869 0.73 -1.0 398,402 + H281DRAFT_03869 0.78 +0.4 398,403 - H281DRAFT_03869 0.78 +0.4 398,590 - +0.1 398,612 + -0.4 398,612 + -0.3 398,613 - +0.1 398,809 + H281DRAFT_03870 0.70 -0.8 398,809 + H281DRAFT_03870 0.70 -0.2 398,809 + H281DRAFT_03870 0.70 +0.2 398,809 + H281DRAFT_03870 0.70 -1.2 398,810 - H281DRAFT_03870 0.71 -0.9 398,916 - +0.1 398,916 - +0.6 398,916 - -0.0 399,221 + +0.3 399,276 + -0.3 399,292 + +0.4 399,293 - +1.1 399,403 - -0.0 399,512 - H281DRAFT_03871 0.14 -0.9 399,541 + H281DRAFT_03871 0.15 -0.7 399,541 + H281DRAFT_03871 0.15 +0.9 399,688 + H281DRAFT_03871 0.24 +1.5 399,852 + H281DRAFT_03871 0.33 +0.1 400,049 - H281DRAFT_03871 0.45 -0.1 400,090 + H281DRAFT_03871 0.47 +0.0 400,148 - H281DRAFT_03871 0.51 +0.1 400,148 - H281DRAFT_03871 0.51 +0.4 400,344 + H281DRAFT_03871 0.62 -0.2 400,345 - H281DRAFT_03871 0.62 +0.4 400,382 - H281DRAFT_03871 0.64 +2.7 400,525 + H281DRAFT_03871 0.72 +0.2 400,525 + H281DRAFT_03871 0.72 +0.2 400,525 + H281DRAFT_03871 0.72 +0.5 400,633 + H281DRAFT_03871 0.79 -0.9 400,648 + H281DRAFT_03871 0.80 +0.3 400,648 + H281DRAFT_03871 0.80 +0.3 400,868 - +0.0 400,868 - -0.4 400,951 + -2.2 400,951 + -0.4 400,951 + +0.2 400,951 + -0.1 400,952 - +0.4 400,999 + +0.1 401,000 - -0.1 401,319 + H281DRAFT_03872 0.72 +1.5 401,319 + H281DRAFT_03872 0.72 -0.2 401,320 - H281DRAFT_03872 0.73 +0.2 401,323 + H281DRAFT_03872 0.73 -0.2 401,324 - H281DRAFT_03872 0.74 -0.1 401,452 + -0.1 401,481 + +0.3 401,482 - +0.0 401,616 + H281DRAFT_03873 0.22 -0.7 401,712 - H281DRAFT_03873 0.55 +0.7 401,949 - +0.0 401,949 - -0.4
Or see this region's nucleotide sequence