Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03825 and H281DRAFT_03826 are separated by 65 nucleotides H281DRAFT_03826 and H281DRAFT_03827 are separated by 166 nucleotides
H281DRAFT_03825: H281DRAFT_03825 - diguanylate cyclase (GGDEF) domain-containing protein, at 352,272 to 353,465
_03825
H281DRAFT_03826: H281DRAFT_03826 - uronate dehydrogenase, at 353,531 to 354,382
_03826
H281DRAFT_03827: H281DRAFT_03827 - transcriptional regulator, LacI family, at 354,549 to 355,541
_03827
Position (kb) 353
354
355 Strain fitness (log2 ratio) -1
0
1
2 at 352.587 kb on + strand, within H281DRAFT_03825 at 352.588 kb on - strand, within H281DRAFT_03825 at 352.650 kb on + strand, within H281DRAFT_03825 at 352.650 kb on + strand, within H281DRAFT_03825 at 353.070 kb on - strand, within H281DRAFT_03825 at 353.188 kb on + strand, within H281DRAFT_03825 at 353.460 kb on + strand at 353.460 kb on + strand at 353.734 kb on - strand, within H281DRAFT_03826 at 353.868 kb on - strand, within H281DRAFT_03826 at 354.035 kb on + strand, within H281DRAFT_03826 at 354.060 kb on + strand at 354.069 kb on + strand, within H281DRAFT_03826 at 354.069 kb on + strand, within H281DRAFT_03826 at 354.402 kb on - strand at 354.406 kb on + strand at 354.410 kb on + strand at 354.410 kb on + strand at 354.410 kb on + strand at 354.411 kb on - strand at 354.414 kb on + strand at 354.496 kb on - strand at 354.622 kb on - strand at 354.829 kb on - strand, within H281DRAFT_03827 at 354.998 kb on + strand, within H281DRAFT_03827 at 354.998 kb on + strand, within H281DRAFT_03827 at 354.999 kb on - strand, within H281DRAFT_03827 at 354.999 kb on - strand, within H281DRAFT_03827 at 355.044 kb on + strand, within H281DRAFT_03827 at 355.044 kb on + strand, within H281DRAFT_03827 at 355.066 kb on + strand, within H281DRAFT_03827 at 355.066 kb on + strand, within H281DRAFT_03827 at 355.371 kb on + strand, within H281DRAFT_03827
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 352,587 + H281DRAFT_03825 0.26 -0.8 352,588 - H281DRAFT_03825 0.26 -0.6 352,650 + H281DRAFT_03825 0.32 +0.1 352,650 + H281DRAFT_03825 0.32 -0.6 353,070 - H281DRAFT_03825 0.67 +0.0 353,188 + H281DRAFT_03825 0.77 +0.1 353,460 + +0.1 353,460 + +0.5 353,734 - H281DRAFT_03826 0.24 -0.3 353,868 - H281DRAFT_03826 0.40 +0.8 354,035 + H281DRAFT_03826 0.59 -0.1 354,060 + +0.1 354,069 + H281DRAFT_03826 0.63 +0.4 354,069 + H281DRAFT_03826 0.63 +0.7 354,402 - +1.0 354,406 + +1.5 354,410 + +2.7 354,410 + -0.7 354,410 + +0.3 354,411 - -0.6 354,414 + +2.7 354,496 - -0.2 354,622 - -1.3 354,829 - H281DRAFT_03827 0.28 +0.1 354,998 + H281DRAFT_03827 0.45 -0.3 354,998 + H281DRAFT_03827 0.45 -1.0 354,999 - H281DRAFT_03827 0.45 -1.3 354,999 - H281DRAFT_03827 0.45 -1.0 355,044 + H281DRAFT_03827 0.50 -1.0 355,044 + H281DRAFT_03827 0.50 -0.1 355,066 + H281DRAFT_03827 0.52 -0.8 355,066 + H281DRAFT_03827 0.52 -0.6 355,371 + H281DRAFT_03827 0.83 +1.0
Or see this region's nucleotide sequence