Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03529

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03527 and H281DRAFT_03528 are separated by 39 nucleotidesH281DRAFT_03528 and H281DRAFT_03529 are separated by 78 nucleotidesH281DRAFT_03529 and H281DRAFT_03530 are separated by 39 nucleotidesH281DRAFT_03530 and H281DRAFT_03531 overlap by 4 nucleotides H281DRAFT_03527: H281DRAFT_03527 - uncharacterized domain 1-containing protein, at 26,210 to 26,644 _03527 H281DRAFT_03528: H281DRAFT_03528 - ureidoglycolate lyase, at 26,684 to 27,532 _03528 H281DRAFT_03529: H281DRAFT_03529 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 27,611 to 28,354 _03529 H281DRAFT_03530: H281DRAFT_03530 - L-fuconolactonase, at 28,394 to 29,236 _03530 H281DRAFT_03531: H281DRAFT_03531 - D-threo-aldose 1-dehydrogenase, at 29,233 to 30,273 _03531 Position (kb) 27 28 29Strain fitness (log2 ratio) -1 0 1at 26.697 kb on + strandat 26.698 kb on - strandat 26.763 kb on + strandat 26.763 kb on + strandat 26.764 kb on - strandat 26.856 kb on + strand, within H281DRAFT_03528at 26.856 kb on + strand, within H281DRAFT_03528at 26.856 kb on + strand, within H281DRAFT_03528at 26.856 kb on + strand, within H281DRAFT_03528at 26.856 kb on + strand, within H281DRAFT_03528at 26.857 kb on - strand, within H281DRAFT_03528at 27.085 kb on - strand, within H281DRAFT_03528at 27.096 kb on + strand, within H281DRAFT_03528at 27.096 kb on + strand, within H281DRAFT_03528at 27.097 kb on - strand, within H281DRAFT_03528at 27.123 kb on + strand, within H281DRAFT_03528at 27.123 kb on + strand, within H281DRAFT_03528at 27.123 kb on + strand, within H281DRAFT_03528at 27.124 kb on - strand, within H281DRAFT_03528at 27.124 kb on - strand, within H281DRAFT_03528at 27.124 kb on - strand, within H281DRAFT_03528at 27.295 kb on - strand, within H281DRAFT_03528at 27.447 kb on - strand, within H281DRAFT_03528at 27.447 kb on - strand, within H281DRAFT_03528at 27.571 kb on + strandat 27.571 kb on + strandat 27.571 kb on + strandat 27.571 kb on + strandat 27.605 kb on + strandat 27.605 kb on + strandat 27.848 kb on - strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.854 kb on + strand, within H281DRAFT_03529at 27.924 kb on + strand, within H281DRAFT_03529at 27.924 kb on + strand, within H281DRAFT_03529at 27.925 kb on - strand, within H281DRAFT_03529at 27.973 kb on + strand, within H281DRAFT_03529at 27.973 kb on + strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 27.974 kb on - strand, within H281DRAFT_03529at 28.035 kb on + strand, within H281DRAFT_03529at 28.378 kb on - strandat 28.561 kb on + strand, within H281DRAFT_03530at 28.562 kb on - strand, within H281DRAFT_03530at 28.806 kb on + strand, within H281DRAFT_03530at 28.807 kb on - strand, within H281DRAFT_03530at 29.040 kb on + strand, within H281DRAFT_03530at 29.142 kb on + strand, within H281DRAFT_03530at 29.176 kb on - strandat 29.176 kb on - strandat 29.176 kb on - strandat 29.199 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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26,697 + -0.4
26,698 - +0.1
26,763 + -0.3
26,763 + +0.6
26,764 - +0.5
26,856 + H281DRAFT_03528 0.20 +0.5
26,856 + H281DRAFT_03528 0.20 +0.6
26,856 + H281DRAFT_03528 0.20 +0.9
26,856 + H281DRAFT_03528 0.20 -1.7
26,856 + H281DRAFT_03528 0.20 +0.4
26,857 - H281DRAFT_03528 0.20 -0.3
27,085 - H281DRAFT_03528 0.47 +0.0
27,096 + H281DRAFT_03528 0.49 -1.0
27,096 + H281DRAFT_03528 0.49 -0.1
27,097 - H281DRAFT_03528 0.49 +0.4
27,123 + H281DRAFT_03528 0.52 -0.4
27,123 + H281DRAFT_03528 0.52 +0.4
27,123 + H281DRAFT_03528 0.52 -0.1
27,124 - H281DRAFT_03528 0.52 -0.3
27,124 - H281DRAFT_03528 0.52 +0.3
27,124 - H281DRAFT_03528 0.52 -0.1
27,295 - H281DRAFT_03528 0.72 -1.4
27,447 - H281DRAFT_03528 0.90 -0.3
27,447 - H281DRAFT_03528 0.90 -0.3
27,571 + +0.0
27,571 + +0.1
27,571 + +0.2
27,571 + +0.7
27,605 + +0.2
27,605 + -0.9
27,848 - H281DRAFT_03529 0.32 -0.2
27,854 + H281DRAFT_03529 0.33 +0.2
27,854 + H281DRAFT_03529 0.33 -0.5
27,854 + H281DRAFT_03529 0.33 +0.7
27,854 + H281DRAFT_03529 0.33 -0.3
27,924 + H281DRAFT_03529 0.42 -0.2
27,924 + H281DRAFT_03529 0.42 -0.3
27,925 - H281DRAFT_03529 0.42 +0.2
27,973 + H281DRAFT_03529 0.49 -0.7
27,973 + H281DRAFT_03529 0.49 +0.2
27,974 - H281DRAFT_03529 0.49 +0.4
27,974 - H281DRAFT_03529 0.49 +0.3
27,974 - H281DRAFT_03529 0.49 +0.2
27,974 - H281DRAFT_03529 0.49 +0.4
27,974 - H281DRAFT_03529 0.49 +0.4
27,974 - H281DRAFT_03529 0.49 +0.8
28,035 + H281DRAFT_03529 0.57 +0.5
28,378 - -0.4
28,561 + H281DRAFT_03530 0.20 +0.1
28,562 - H281DRAFT_03530 0.20 -1.1
28,806 + H281DRAFT_03530 0.49 +1.0
28,807 - H281DRAFT_03530 0.49 -0.8
29,040 + H281DRAFT_03530 0.77 -0.4
29,142 + H281DRAFT_03530 0.89 +0.5
29,176 - +0.1
29,176 - +0.6
29,176 - -0.6
29,199 + -0.0

Or see this region's nucleotide sequence