Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03340

Experiment: Hydroxy-L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03339 and H281DRAFT_03340 are separated by 111 nucleotidesH281DRAFT_03340 and H281DRAFT_03341 are separated by 29 nucleotides H281DRAFT_03339: H281DRAFT_03339 - transcriptional regulator, LysR family, at 396,951 to 397,838 _03339 H281DRAFT_03340: H281DRAFT_03340 - hypothetical protein, at 397,950 to 398,966 _03340 H281DRAFT_03341: H281DRAFT_03341 - Predicted arabinose efflux permease, MFS family, at 398,996 to 400,357 _03341 Position (kb) 397 398 399Strain fitness (log2 ratio) -1 0 1at 397.004 kb on - strandat 397.914 kb on + strandat 397.918 kb on - strandat 398.471 kb on + strand, within H281DRAFT_03340at 398.471 kb on + strand, within H281DRAFT_03340at 398.723 kb on - strand, within H281DRAFT_03340at 398.740 kb on - strand, within H281DRAFT_03340at 398.746 kb on - strand, within H281DRAFT_03340at 399.077 kb on + strandat 399.148 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.726 kb on + strand, within H281DRAFT_03341at 399.890 kb on + strand, within H281DRAFT_03341at 399.891 kb on - strand, within H281DRAFT_03341

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
remove
397,004 - +0.5
397,914 + -0.5
397,918 - +0.2
398,471 + H281DRAFT_03340 0.51 -0.2
398,471 + H281DRAFT_03340 0.51 +1.0
398,723 - H281DRAFT_03340 0.76 +0.2
398,740 - H281DRAFT_03340 0.78 +0.8
398,746 - H281DRAFT_03340 0.78 +0.8
399,077 + -0.9
399,148 - H281DRAFT_03341 0.11 +0.8
399,518 - H281DRAFT_03341 0.38 -0.8
399,518 - H281DRAFT_03341 0.38 -0.9
399,726 + H281DRAFT_03341 0.54 +1.0
399,890 + H281DRAFT_03341 0.66 +0.1
399,891 - H281DRAFT_03341 0.66 -1.5

Or see this region's nucleotide sequence