Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03209 and H281DRAFT_03210 are separated by 460 nucleotides H281DRAFT_03210 and H281DRAFT_03211 are separated by 10 nucleotides H281DRAFT_03211 and H281DRAFT_03212 are separated by 8 nucleotides H281DRAFT_03212 and H281DRAFT_03213 are separated by 164 nucleotides
H281DRAFT_03209: H281DRAFT_03209 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 257,278 to 258,000
_03209
H281DRAFT_03210: H281DRAFT_03210 - transcriptional regulator, AraC family, at 258,461 to 259,228
_03210
H281DRAFT_03211: H281DRAFT_03211 - hypothetical protein, at 259,239 to 259,568
_03211
H281DRAFT_03212: H281DRAFT_03212 - hypothetical protein, at 259,577 to 259,837
_03212
H281DRAFT_03213: H281DRAFT_03213 - hypothetical protein, at 260,002 to 260,334
_03213
Position (kb) 258
259
260 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 257.538 kb on + strand, within H281DRAFT_03209 at 257.539 kb on - strand, within H281DRAFT_03209 at 257.539 kb on - strand, within H281DRAFT_03209 at 257.539 kb on - strand, within H281DRAFT_03209 at 257.573 kb on - strand, within H281DRAFT_03209 at 257.638 kb on + strand, within H281DRAFT_03209 at 257.672 kb on + strand, within H281DRAFT_03209 at 257.929 kb on + strand at 257.929 kb on + strand at 257.930 kb on - strand at 257.930 kb on - strand at 257.931 kb on + strand at 257.976 kb on - strand at 257.976 kb on - strand at 257.976 kb on - strand at 258.081 kb on - strand at 258.206 kb on + strand at 258.207 kb on - strand at 258.331 kb on + strand at 258.331 kb on + strand at 258.354 kb on + strand at 258.355 kb on - strand at 258.355 kb on - strand at 258.357 kb on - strand at 258.415 kb on + strand at 258.416 kb on - strand at 258.416 kb on - strand at 258.416 kb on - strand at 258.416 kb on - strand at 258.429 kb on + strand at 258.431 kb on + strand at 258.704 kb on + strand, within H281DRAFT_03210 at 258.704 kb on + strand, within H281DRAFT_03210 at 258.704 kb on + strand, within H281DRAFT_03210 at 258.705 kb on - strand, within H281DRAFT_03210 at 258.942 kb on - strand, within H281DRAFT_03210 at 258.942 kb on - strand, within H281DRAFT_03210 at 259.011 kb on - strand, within H281DRAFT_03210 at 259.023 kb on + strand, within H281DRAFT_03210 at 259.024 kb on - strand, within H281DRAFT_03210 at 259.024 kb on - strand, within H281DRAFT_03210 at 259.024 kb on - strand, within H281DRAFT_03210 at 259.105 kb on - strand, within H281DRAFT_03210 at 259.238 kb on + strand at 259.238 kb on + strand at 259.263 kb on + strand at 259.264 kb on - strand at 259.264 kb on - strand at 259.264 kb on - strand at 259.270 kb on - strand at 259.356 kb on + strand, within H281DRAFT_03211 at 259.357 kb on - strand, within H281DRAFT_03211 at 259.357 kb on - strand, within H281DRAFT_03211 at 259.467 kb on + strand, within H281DRAFT_03211 at 259.467 kb on + strand, within H281DRAFT_03211 at 259.566 kb on + strand at 259.578 kb on + strand at 259.579 kb on - strand at 259.817 kb on - strand at 260.067 kb on - strand, within H281DRAFT_03213 at 260.075 kb on + strand, within H281DRAFT_03213 at 260.176 kb on - strand, within H281DRAFT_03213
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 257,538 + H281DRAFT_03209 0.36 +0.5 257,539 - H281DRAFT_03209 0.36 +0.2 257,539 - H281DRAFT_03209 0.36 +1.5 257,539 - H281DRAFT_03209 0.36 +0.2 257,573 - H281DRAFT_03209 0.41 -0.2 257,638 + H281DRAFT_03209 0.50 +0.2 257,672 + H281DRAFT_03209 0.54 +0.9 257,929 + +0.8 257,929 + +0.6 257,930 - +0.6 257,930 - +0.5 257,931 + +0.5 257,976 - +0.5 257,976 - +0.6 257,976 - -0.6 258,081 - +0.2 258,206 + +0.5 258,207 - -1.1 258,331 + +1.2 258,331 + +1.1 258,354 + +1.1 258,355 - +1.8 258,355 - +1.1 258,357 - -1.5 258,415 + +1.5 258,416 - -1.9 258,416 - -0.8 258,416 - -1.3 258,416 - -1.7 258,429 + +1.7 258,431 + +1.3 258,704 + H281DRAFT_03210 0.32 -2.4 258,704 + H281DRAFT_03210 0.32 -0.2 258,704 + H281DRAFT_03210 0.32 -2.3 258,705 - H281DRAFT_03210 0.32 -3.5 258,942 - H281DRAFT_03210 0.63 -4.1 258,942 - H281DRAFT_03210 0.63 -3.8 259,011 - H281DRAFT_03210 0.72 -2.5 259,023 + H281DRAFT_03210 0.73 -5.6 259,024 - H281DRAFT_03210 0.73 -3.8 259,024 - H281DRAFT_03210 0.73 -1.7 259,024 - H281DRAFT_03210 0.73 -4.5 259,105 - H281DRAFT_03210 0.84 -3.4 259,238 + +0.6 259,238 + -0.5 259,263 + +0.7 259,264 - +1.5 259,264 - -0.4 259,264 - -1.1 259,270 - +0.3 259,356 + H281DRAFT_03211 0.35 -0.7 259,357 - H281DRAFT_03211 0.36 -0.3 259,357 - H281DRAFT_03211 0.36 +0.3 259,467 + H281DRAFT_03211 0.69 -0.6 259,467 + H281DRAFT_03211 0.69 +0.1 259,566 + +1.9 259,578 + +0.3 259,579 - -0.9 259,817 - +0.1 260,067 - H281DRAFT_03213 0.20 +0.2 260,075 + H281DRAFT_03213 0.22 -0.2 260,176 - H281DRAFT_03213 0.52 -0.0
Or see this region's nucleotide sequence