Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03058

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03057 and H281DRAFT_03058 are separated by 26 nucleotidesH281DRAFT_03058 and H281DRAFT_03059 are separated by 25 nucleotides H281DRAFT_03057: H281DRAFT_03057 - Permease of the drug/metabolite transporter (DMT) superfamily, at 89,038 to 90,099 _03057 H281DRAFT_03058: H281DRAFT_03058 - CheY chemotaxis protein or a CheY-like REC (receiver) domain, at 90,126 to 90,497 _03058 H281DRAFT_03059: H281DRAFT_03059 - two-component system, chemotaxis family, CheB/CheR fusion protein, at 90,523 to 93,663 _03059 Position (kb) 90 91Strain fitness (log2 ratio) -1 0 1 2at 89.161 kb on + strand, within H281DRAFT_03057at 89.364 kb on - strand, within H281DRAFT_03057at 89.766 kb on + strand, within H281DRAFT_03057at 89.785 kb on + strand, within H281DRAFT_03057at 89.785 kb on + strand, within H281DRAFT_03057at 89.928 kb on + strand, within H281DRAFT_03057at 89.928 kb on + strand, within H281DRAFT_03057at 89.928 kb on + strandat 90.021 kb on + strandat 90.142 kb on - strandat 90.250 kb on - strand, within H281DRAFT_03058at 90.251 kb on + strand, within H281DRAFT_03058at 90.545 kb on - strandat 90.943 kb on - strand, within H281DRAFT_03059at 91.261 kb on - strand, within H281DRAFT_03059

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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89,161 + H281DRAFT_03057 0.12 -0.2
89,364 - H281DRAFT_03057 0.31 +0.3
89,766 + H281DRAFT_03057 0.69 -0.0
89,785 + H281DRAFT_03057 0.70 +0.1
89,785 + H281DRAFT_03057 0.70 +0.2
89,928 + H281DRAFT_03057 0.84 +0.4
89,928 + H281DRAFT_03057 0.84 +0.1
89,928 + +1.9
90,021 + -0.5
90,142 - -0.1
90,250 - H281DRAFT_03058 0.33 +0.8
90,251 + H281DRAFT_03058 0.34 +0.5
90,545 - +0.4
90,943 - H281DRAFT_03059 0.13 +0.5
91,261 - H281DRAFT_03059 0.23 +0.2

Or see this region's nucleotide sequence