Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02968

Experiment: Hydroxy-L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02966 and H281DRAFT_02967 are separated by 196 nucleotidesH281DRAFT_02967 and H281DRAFT_02968 overlap by 4 nucleotidesH281DRAFT_02968 and H281DRAFT_02969 are separated by 11 nucleotidesH281DRAFT_02969 and H281DRAFT_02970 overlap by 4 nucleotides H281DRAFT_02966: H281DRAFT_02966 - nucleoside-binding protein, at 580,933 to 581,958 _02966 H281DRAFT_02967: H281DRAFT_02967 - Nicotinamidase-related amidase, at 582,155 to 582,961 _02967 H281DRAFT_02968: H281DRAFT_02968 - amidase, at 582,958 to 584,109 _02968 H281DRAFT_02969: H281DRAFT_02969 - Protein of unknown function (DUF4089), at 584,121 to 584,312 _02969 H281DRAFT_02970: H281DRAFT_02970 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 584,309 to 585,730 _02970 Position (kb) 582 583 584 585Strain fitness (log2 ratio) -1 0 1at 581.986 kb on + strandat 581.995 kb on + strandat 583.394 kb on - strand, within H281DRAFT_02968at 584.705 kb on + strand, within H281DRAFT_02970at 584.904 kb on - strand, within H281DRAFT_02970at 584.999 kb on + strand, within H281DRAFT_02970at 585.107 kb on + strand, within H281DRAFT_02970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
remove
581,986 + +0.1
581,995 + -0.5
583,394 - H281DRAFT_02968 0.38 +0.5
584,705 + H281DRAFT_02970 0.28 -1.1
584,904 - H281DRAFT_02970 0.42 -0.8
584,999 + H281DRAFT_02970 0.49 +0.2
585,107 + H281DRAFT_02970 0.56 -0.8

Or see this region's nucleotide sequence